BAC Information

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BAC

Clone NameMSMg01-375O10
Chromosome1 (Build37)1 (Build37)
Map Location 87,482,935 - 87,483,36287,482,941 - 87,483,369
singlet/doubletsingletsinglet
Overlap geneSp110
Upstream geneLOC100040213, LOC100039794, EG665338
Downstream geneSp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375O10.T7 (MSMg01no375_o10.b1)MSMg01-375O10.TJ (MSMg01no375_o10.g1)
ACCAG481345AG481346
length784784
length of high quality
(start - end)
432 (50 - 481)429 (77 - 505)
definitionCHROMAT_FILE: MSMg01no375_o10.b1 PHD_FILE: MSMg01no375_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:38 2005CHROMAT_FILE: MSMg01no375_o10.g1 PHD_FILE: MSMg01no375_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:38 2005
singlet/doubletsingletsinglet
BLAST hitpluralplural
Map location.(87,482,935 - 87,483,362)(87,482,941 - 87,483,369)
sequence
NTTACTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAACTATGTTTTTGTCTGTTAATTGTGCACTTGCACGTGTGT
ATATGTGTATGTTTTAACTCCGAGTTATCTCTCTGATCTCAACCCTAACC
TTTTTAAATGATCAGCTGGGAAGGAAGAAGAGATCAGAGTTTTGAACTAG
AAGGAGCAAGCTTCAAGGACAAGTGTTAAAATGAGAATTCTTTGAATCAG
TTCTTGGGAAATTAAGCTAGGGAACAGACAATGGTAGAGCCTAAGGATGA
CTTCTGGGCATGAGAACCCAAGAATTTGTGAAGGGAAAACAAGAACCAGA
CGTGAGGAGATAAAGACTTGAGCAGCTGGAGTATTGGATCGTTTGCCTGC
TATCCCAGCACTTGAAAGCATCCACGACCATGGAAAGAACTGAGGTGGGA
GAAAACGGACTTGGAAGGCTTCCAGGAAGCAATGGGGAAACCAATGGATG
ACAGTATCAGAAAGGTCACAGTGTTTTTATCATTATTATCATTATCATAA
TTATGATATTTATCATCATGTGGTAGGTTGGGCTCACGTTCCATGGTTTT
CCCGGAGAGGCCAGCAACATTCTTTTTTAATATGTGCCTTGTTCTTCCAT
CCTTATGGCATTTCCGTGATTCACTTTTTCGCCTTTCCTTCTCTTGTTTC
TTCCTTGTCATCCCTTTTTCTTTTCTACACTTTCCTTTTCTCTTCGCGAT
ATCTCTTTTATGCTCTTTGTTTTTCCCACTTTCG
NNCCGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACTATGTTTTTGTCTGTTAATTG
TGCACTTGCACGTGTGTATATGTGTATGTTTTAACTCCGAGTTATCTCTC
TGATCTCAACCCTAACCTTTTTAAATGATCAGCTGGGAAGGAAGAAGAGA
TCAGAGTTTTGAACTAGAAGGAGCAAGCTTCAAGGACAAGTGTTAAAATG
AGAATTCTTTGAATCAGTTCTTGGGAAATTAAGCTAGGGAACAGACAATG
GTAGAGCCTAAGGATGACTTTTTGTTTTGAGAACCCAAGAATTTGTGAAG
GGAAAACAAGAACCAGACATGAGGAGATAAAGACTTGAGCAGCTGGAGTA
TTGGATCGTTTGCCTGCTATCCCAGCACTTGAAAGCATCCAGGACCATGG
AAAGAACTGAGGTGGGAGAAAACGGACTTGGAAGGCTTCCAGGAAGCAAT
GGGGAAACCAATGGATGACAGTATCAGAAAGGTCCCAGCGTTTTTATCAT
TATTATCCTTATCATAATTATGATATTTATCAGTATGTGTAGGTTGGGCC
TATTGTCTTTTGGCACCTATGTTTTATGTCAACATTTCCCTTTGTGAGTT
TGTGTTTGTTTTTTTCCCCCTTACGTCTTTGCCGGGTACCCATTTTCTCG
CTTCCCTCCTATTTTGCCTCTGTTTCGCTATCCCCCTTTTTCCCTTTTAC
CCTCTTATGCAACGCAGAAATACTTCTTTTATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_o10.b1 MSMg01no375_o10.b1 CHROMAT_FILE:
MSMg01no375_o10.b1 PHD_FILE: MSMg01no375_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:38 2005
         (432 letters)



>mm_chr1_87482731_87483562
          Length = 832

 Score =  774 bits (400), Expect = 0.0
 Identities = 421/428 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaactatgtttttgtctgttaattgtgcacttgcacgtgtgtatatgtgtatgtt 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattcaactatgtttttgtctgttaattgtgcacttgcacgtgtgtatatgtgtatgat 264

                                                                       
Query: 65  ttaactccgagttatctctctgatctcaaccctaacctttttaaatgatcagctgggaag 124
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 ttaactccgagttatctctctgatctcaaccctaacctttttaaatgaccagctgggaag 324

                                                                       
Query: 125 gaagaagagatcagagttttgaactagaaggagcaagcttcaaggacaagtgttaaaatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaagaagagatcagagttttgaactagaaggagcaagcttcaaggacaagtgttaaaatg 384

                                                                       
Query: 185 agaattctttgaatcagttcttgggaaattaagctagggaacagacaatggtagagccta 244
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 agaattctttgaatcagttcttgggaaattaagctagggaacagataatggtagagccta 444

                                                                       
Query: 245 aggatgacttctgggcatgagaacccaagaatttgtgaagggaaaacaagaaccagacgt 304
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 445 aggatgacttctgggcatgagaaaccaagaatttgtgaagggaaaacaagaaccagacat 504

                                                                       
Query: 305 gaggagataaagacttgagcagctggagtattggatcgtttgcctgctatcccagcactt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaggagataaagacttgagcagctggagtattggatcgtttgcctgctatcccagcactt 564

                                                                       
Query: 365 gaaagcatccacgaccatggaaagaactgaggtgggagaaaacggacttggaaggcttcc 424
           ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 565 gaaagcatccaggaccatggaaagaaccgaggtgggagaaaacggacttggaaggcttcc 624

                   
Query: 425 aggaagca 432
           ||||||||
Sbjct: 625 aggaagca 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no375_o10.g1 MSMg01no375_o10.g1 CHROMAT_FILE:
MSMg01no375_o10.g1 PHD_FILE: MSMg01no375_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:38 2005
         (429 letters)



>mm_chr1_87482741_87483569
          Length = 829

 Score =  752 bits (389), Expect = 0.0
 Identities = 419/429 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactatgtttttgtctgttaattgtgcacttgcacgtgtgtatatgtgtatgttttaact 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 aactatgtttttgtctgttaattgtgcacttgcacgtgtgtatatgtgtatgatttaact 260

                                                                       
Query: 61  ccgagttatctctctgatctcaaccctaacctttttaaatgatcagctgggaaggaagaa 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 ccgagttatctctctgatctcaaccctaacctttttaaatgaccagctgggaaggaagaa 320

                                                                       
Query: 121 gagatcagagttttgaactagaaggagcaagcttcaaggacaagtgttaaaatgagaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagatcagagttttgaactagaaggagcaagcttcaaggacaagtgttaaaatgagaatt 380

                                                                       
Query: 181 ctttgaatcagttcttgggaaattaagctagggaacagacaatggtagagcctaaggatg 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 ctttgaatcagttcttgggaaattaagctagggaacagataatggtagagcctaaggatg 440

                                                                       
Query: 241 actttttgttttgagaacccaagaatttgtgaagggaaaacaagaaccagacatgaggag 300
           |||| | |   |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttctgggcatgagaaaccaagaatttgtgaagggaaaacaagaaccagacatgaggag 500

                                                                       
Query: 301 ataaagacttgagcagctggagtattggatcgtttgcctgctatcccagcacttgaaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataaagacttgagcagctggagtattggatcgtttgcctgctatcccagcacttgaaagc 560

                                                                       
Query: 361 atccaggaccatggaaagaactgaggtgggagaaaacggacttggaaggcttccaggaag 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atccaggaccatggaaagaaccgaggtgggagaaaacggacttggaaggcttccaggaag 620

                    
Query: 421 caatgggga 429
           |||||||||
Sbjct: 621 caatgggga 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)