Query= MSMg01no376_a03.b1 MSMg01no376_a03.b1 CHROMAT_FILE:
MSMg01no376_a03.b1 PHD_FILE: MSMg01no376_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:47 2005
(622 letters)
>mm_chr1_102795643_102796670
Length = 1028
Score = 1094 bits (566), Expect = 0.0
Identities = 608/624 (97%), Gaps = 6/624 (0%)
Strand = Plus / Minus
Query: 5 gaattctttccgtggggctagagagatagcttagcagttaagagcattgattggtctttc 64
|||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 969 gaattctttctgtggggctagagagatggcttaacagttaagagcattgattggtctttc 910
Query: 65 agaggtcccaggttaaattcccagcaaccacatggtggctcacaaccatctgtaatagga 124
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 agaggtcccaggttaaatccccagcaaccacatggtggctcacaaccatctgtaatagga 850
Query: 125 tcagatgtcctcttctgttgtgtctaaaggcagaaacaatgtattcacatatatgaaata 184
|||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 849 tcagatatcctcttctgttgtgtctaaaggcagaagcagtgtattcacatatatgaaata 790
Query: 185 aataaatcttaacaacactagaaaagaaatttgttttttaaaaagagaattatttttgct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 aataaatcttaacaacactagaaaagaaatttgttttttaaaaagagaattatttttgct 730
Query: 245 aaaaaggacaggtgcattgaaactactgcactaagcaaagaagcttgtatcctgatacta 304
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 729 aaaaaggacaggtgcattgaaactactgcactaagcaaagaagcttgtgtcctgatacta 670
Query: 305 tgacacaaaatacagatataaacatcccatacaatcattttgcctgaaatgtacacaaaa 364
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tgacacaaaatatagatataaacatcccatacaatcattttgcctgaaatgtacacaaaa 610
Query: 365 gggttaccattggcaacatagatattaaaaataacaatttgcaatataattataatt-aa 423
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 609 gagttaccattggcaacatagatattaaaaataacaatttgcaatataattataattaaa 550
Query: 424 aacattcattaacttctacaattcccatatttatttatgtaatatcaaagcttacatatc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aacattcattaacttctacaattcccatatttatttatgtaatatcaaagcttacatatc 490
Query: 484 accagtctttatgtcaactgttatattgacattttgat---aaaaaaaaaaacatttcct 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 489 accagtctttatgtcaactgttatattgacattttgataaaaaaaaaaaaaacatttcct 430
Query: 541 g--aagttattctttcctccttctctttctccttctccttcttctctttcaccttctctt 598
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gaaaagttattctttcctccttctctttctccttctccttcttctctttcaccttctctt 370
Query: 599 ccttcttctccttcttctaaataa 622
||||||||||||||||||||||||
Sbjct: 369 ccttcttctccttcttctaaataa 346
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1028
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1018
Effective search space: 623016
Effective search space used: 623016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_a03.g1 MSMg01no376_a03.g1 CHROMAT_FILE:
MSMg01no376_a03.g1 PHD_FILE: MSMg01no376_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:47 2005
(245 letters)
>mm_chr1_102635055_102635699
Length = 645
Score = 443 bits (229), Expect = e-129
Identities = 238/241 (98%)
Strand = Plus / Plus
Query: 1 acatcttctctcccctcatttacattttcacgtttttgagtgagagtcccaataaggaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 acatcttctctcccctcatttacattttcacgtttttgagtgagagtctcaataaggaaa 260
Query: 61 ctggaatgaaatgttgggggtaaaaaaattgttagaagatttattaccaccatggagaaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 ctggaatgaaatgttgggggtaaaaaaattgttagaagatttattaccaccatggagaga 320
Query: 121 caaacaggaacaggaacatagataaactaacatcataggagctctgaggagacttcattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaacaggaacaggaacatagataaactaacatcataggagctctgaggagacttcattc 380
Query: 181 cccagtgccagaatggactgtcaggtttagggttagggttagggttagggttagggttag 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccagtgccagaatggactttcaggtttagggttagggttagggttagggttagggttag 440
Query: 241 g 241
|
Sbjct: 441 g 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
