AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGTAAATTTATGCTAAAGAGATAAGCATTCTTTTTCATTTAACAG
GGTGCTATATTTTCCTTCTGGAATCCCCAGCAGCTAAGTGTAGTACCTTA
CAGAGCAAGGCAAGGATGGTTAGTCTTGCCATTCTTCTGAATTACTTAGG
AGCATGTAATGTTTGTCTTTTCTTCTATATCTTCTCTAAGCATGCTTCCC
CTAATACTTTTGGCTTCTCCAATTTTTGACTTCTTTACTCTTTCTAAGTA
TCTCTTCCTCCTACTGAGTGGCTGCTTGTCCATCATGTCTGATCTCTGTG
CAGGCTTAAATGGCACCCTCCTTCATCCTCCTTCAGGTAAATGTTGAGAC
TTACAGCTTGCCAACCCTGTACTTTGTTTTTTGGGTTTTTTTAAACTCGA
ACAAAATTATCCTTTAGTTTAAAAAGAAGAAAAATAAAGAAAGAATCTTC
CTCTTGCTTCTGTAGTAATTAGATTGCTCTTACCCATCCTTGCTATCCAT
CCTCCATAAGATTTGTTTATTCCTCACTACTGGCAAGGGAGACAGGGTAC
ATGGGAGAAATTGAGAGGGAGAAAGGAAAGGGGGAAATTATGTTAATGTA
TTATTNTATCAAATTTAACAATAAGTTTTTTAATACTATTTTGAAATATG
AAGAAAAAAGGGAATGGTCCCAAATCCTTTAAAATGAATTCCCCCCAAGG
GAAAGAAGGTG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAAT
GGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCAT
GTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATT
TTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACGTACTTGGTCA
GGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCAAGAATTTT
ATTAAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCT
CTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCT
TCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATCTTGTGAAATAG
TTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTG
CACTAAACCCATCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTAATA
ACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAAGGTCAACTTG
ATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTTCCATTTC
CTCCAGGTTTTCCAGTTTTGTTGAGAATAAATTTTTTGTAAAATAATCTC
AAGGGTGTTTTGGAATTCCTCCCGGATCTGTTGAATTCGCTCCCCTTN

Query= MSMg01no376_b12.b1 MSMg01no376_b12.b1 CHROMAT_FILE:
MSMg01no376_b12.b1 PHD_FILE: MSMg01no376_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:54 2005
         (516 letters)



>mm_chr1_96488455_96489370
          Length = 916

 Score =  878 bits (454), Expect = 0.0
 Identities = 493/512 (96%), Gaps = 10/512 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagtaaatttatgctaaagagataagcattctttttcatttaacagggtgctat 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||          
Sbjct: 766 gaattcaagtaaatccatgctaaagagataagcattctttttcatttaac---------- 717

                                                                       
Query: 65  attttccttctggaatccccagcagctaagtgtagtaccttacagagcaaggcaaggatg 124
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 716 attttacttctggaatccccagcagctaagtgtagtaccttacagagcaaggcaagaatg 657

                                                                       
Query: 125 gttagtcttgccattcttctgaattacttaggagcatgtaatgtttgtcttttcttctat 184
           |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 656 gttagtcttgccattcttctgaatcacttaggagcatgtaatgtttctcttttcttctat 597

                                                                       
Query: 185 atcttctctaagcatgcttcccctaatacttttggcttctccaatttttgacttctttac 244
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 atcatctctaagcatgcttcccctaatacttttggcttctccaatttttgacttctttac 537

                                                                       
Query: 245 tctttctaagtatctcttcctcctactgagtggctgcttgtccatcatgtctgatctctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tctttctaagtatctcttcctcctactgagtggctgcttgtccatcatgtctgatctctg 477

                                                                       
Query: 305 tgcaggcttaaatggcaccctccttcatcctccttcaggtaaatgttgagacttacagct 364
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 476 tgcaggcttaaatggcaccctccttcatcctccttcaggtagatgctgagacttacagct 417

                                                                       
Query: 365 tgccaaccctgtactttgttttttgggtttttttaaactcgaacaaaattatcctttagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tgccaaccctgtactttgttttttgggtttttttaaactcgaacaaaattatcctttagt 357

                                                                       
Query: 425 ttaaaaagaagaaaaataaagaaagaatcttcctcttgcttctgtagtaattagattgct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ttaaaaagaagaaaaataaagaaagaatcttcctcttgcttctgtagtaattagattgct 297

                                           
Query: 485 cttacccatccttgctatccatcctccataag 516
           ||||||||||||||||||||||||||||||||
Sbjct: 296 cttacccatccttgctatccatcctccataag 265


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)