TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGGCCATGAATCAGGAGTGGGCAGGTTGGGGAGCGGGGTGGGG
GGGCAGGGTATTGGGAGCTTTGGGGATAGCATTTGAAATGTAAATGAAGA
AAATATCTAATTTAAAAAGTCTAAATACTAAAAAAATAGTATTGACTACA
TTACCCAGATAGTTTTCTAATATCTAATCAATGAGTGAATTTTAAAACAT
GTTTATATAGCAGAACATGCTTAAAACTAGTTACAGTAATTAAATTATTG
TAAGAAGTTTTCCTCTGAGGCCTCATTATAGAATTTTCCCATTTACAGGG
AATTGTTAGCTACATCATATATACCATTTTTATAGAAATAATTTTTTGAT
TGGGTTTCTGATTCCACATTGAGAGTCTGTCTATAACTCTCATGTTGGGA
AGCATGTCAACAGGCTGGCAGGCATGGGTAGCTGAGAGTATACATATGAT
CCATAAGAGCAAGGCTGGAAGAGAGGGAAATAAGTGATAGTCCCTCTTGA
CTCTTGAAATTCTGAACTTAGTGATGCACCATTTCCAACCAAATTATACC
TCATAATCCTTTCCAAAAGAGTTCTACCAACTGCCGTAAAAGCACTCACA
TATATCTTGCCTAAAGGGGGGATTCCTCCTTAAATCCCCCCCCCCTTTGA
AATCCTTAAAATCCCAGGACCCCCAATTTTGGGAAAAAATTCCCCCTTCT
N

GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTATTCTATACATTCCCTCCTTCTCAC
TACTCCAGTTGACTAGAGATAGAATAAGACAAAGCCCACCTACCTGGGAA
TTCCCCTAATGTGCTTTATATTGGGACTGTGAGCTTACCTTGGCAGTCTC
TCTATTTTGGTAATGGGAGACCCAGTATGCTGGACTTCTGCAGAATAAAA
CACTCTTGGTGTTTACAAACTATTTGAGTCTGGGGTATCATTCTTCAGTG
AATCATAGACCCTTACAACACAGTTCACCGTGTCCTAATAGCTCCTCTGA
GCTAGAGGCAAAATGGAGGACTCCTTTTCTTTTTCCTTTTTTTTTCATTA
AGTATTTATTTCATTTACATTTCCAATGCTAACTCAAAATACCCCACACC
TTGCCTCAACAACTCCCCCACCCACCCACTCCCACTTCTTGGCCCTGTCG
TTCCTCTGTACTGAAACATAAAGTTTGCAAGACCAATGGGCCTCTCTTTC
CACTGATGGCCAACTAGGCCATCTTCTGATTCATATGCAGCTAGAGACAG
GAGCTCCGGGGGTACTGGTTAGNTCATAAAGTTGTTCCACCTATAGGGTT
GCAGATCCTTTAGCTCCTTGGGAACTTTCTCTAACTCTTCCTTGGGGCCC
CTGGGAACCCTCCAATAGCTGACCGTGAACCTC

Query= MSMg01no376_b16.b1 MSMg01no376_b16.b1 CHROMAT_FILE:
MSMg01no376_b16.b1 PHD_FILE: MSMg01no376_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:55 2005
         (517 letters)



>mm_chr1_29177359_29178275
          Length = 917

 Score =  955 bits (494), Expect = 0.0
 Identities = 509/514 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagggccatgaatcaggagtgggcaggttggggagcggggtgggggggcaggg 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagggccaggaatcaggagtgggcaggttggggagcggggtgggggggcaggg 263

                                                                       
Query: 64  tattgggagctttggggatagcatttgaaatgtaaatgaagaaaatatctaatttaaaaa 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 264 tattgggagctttggggatagcatttgaaatgtaaatgaagaaaatatctaattaaaaaa 323

                                                                       
Query: 124 gtctaaatactaaaaaaatagtattgactacattacccagatagttttctaatatctaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtctaaatactaaaaaaatagtattgactacattacccagatagttttctaatatctaat 383

                                                                       
Query: 184 caatgagtgaattttaaaacatgtttatatagcagaacatgcttaaaactagttacagta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caatgagtgaattttaaaacatgtttatatagcagaacatgcttaaaactagttacagta 443

                                                                       
Query: 244 attaaattattgtaagaagttttcctctgaggcctcattatagaattttcccatttacag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attaaattattgtaagaagttttcctctgaggcctcattatagaattttcccatttacag 503

                                                                       
Query: 304 ggaattgttagctacatcatatataccatttttatagaaataattttttgattgggtttc 363
           ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 504 ggaatcgttagctacatcatatataccatttttatagaaataagtttttgattgggtttc 563

                                                                       
Query: 364 tgattccacattgagagtctgtctataactctcatgttgggaagcatgtcaacaggctgg 423
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 564 tgattccacattgagagtctgtctataactctcatgttgggaagcatggcaacaggctgg 623

                                                                       
Query: 424 caggcatgggtagctgagagtatacatatgatccataagagcaaggctggaagagaggga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caggcatgggtagctgagagtatacatatgatccataagagcaaggctggaagagaggga 683

                                             
Query: 484 aataagtgatagtccctcttgactcttgaaattc 517
           ||||||||||||||||||||||||||||||||||
Sbjct: 684 aataagtgatagtccctcttgactcttgaaattc 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)