TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCTGCAAAGGATAGTATCAGTAAATGCACACTCACACACACGCA
CATGCACACGCGCACACACAGCCTTGTAAAGATATCAAGTATTATAGCTG
TGGTCAATTAACTGATCACATAGTTTATTTTTTAGCACTGGTGACCTTAT
AAACATTTCTTTGTTCAACTTACCCTGGGTTTCTTTTATCTTGGACAACA
CTTACCCTTCATTAAGACCAGAACATAGAAGAATTTCTATTAAGCCACAA
ACACATTATTATAATAATCTCCAGTTTCCTACTGCCTCCTAATAAACTTG
AATGCCAACCTCCTTCCTTGTAGCTGACCAGAGCTTTCCCTCCTAGCTAT
CAGAGCCTGTATCTTTCTCTTTAAAGGGAAGTTGCTTTCTCAAAGCCCAT
GTTTCTCTTTGCATCTTCCAGTACATAGCATGACTCTTTGTGGAAAGTCT
TCTTGCAGAATTCTTTAGTCATATATCTCATTACCCTGCAAAAATATTTG
GTCCTCATCACCTCAAAACAAGAGAGAGGAGAAGAGGGGGCATGACAAGC
AGAAGCCAGGCAGGGAGGTGGTATGACTGCGCTTGTGTTTGGGCATGCCT
TTTCTCTTAAGGNTCCAGACAGCTTTTTCTGTCCCTACCTTCATATCTGT
AGGAAGGTACAGCAGCCTTCAAAGGGATAGGAGGTTC

TTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTTCTGCCCCTGGTATTACACTATCTC
TTTGAGTAAAAGTTAGGTCACTGCCCTTCACAGGAATCTACCATCACCAA
GGAAGAAAGAAGTTTCTGACCGTAGGAGAAACCAGAATAGATACTTAGAA
CTATAGCTGAGTTACACCCATATACAGGAATTTACAATGGTTTAGGAAGT
AGATCGGGCTGTGGTTTTAGAGTATTGCATTATTCATGAGATGGTTAGCT
AGAACGGAACTCCCTAGTTAGAACCATGACTTGGGTGTGAAAGCCCTTGC
CCTAGGAGAGTAAAGACCTCACACCTGGCTTCTAAGACTATAGCTGACCT
TAGATAGGGTTGACTTTGTCTCAGTTATTTTATTGCCCAGTTCCTGCCAG
TCTTTGCGTTTTCATTCCTCTGTTCTGTGTAAGAGTCATTAAGCATCCGG
TTACCTCATTTGTACCTTGCGGGTAAGGCACACAACTTCCTTATTGTCTT
CTGCATAAAAAGTCTGATGCTTAATTTGAAAAATACATTCAGATTCCACA
CGACCTCTCCTGTGTGTGTCTATTTGTCACTCATCCTACGCTTTGTCCAC
CCGAGACTAGAGACCCATTCCACGCAGACCAAGGGGCCCAGAGGGTCTGC
GGCAGGTTCAGACTTCAGCAGCTAGTTTCAGGAATCAAATN

Query= MSMg01no376_f01.b1 MSMg01no376_f01.b1 CHROMAT_FILE:
MSMg01no376_f01.b1 PHD_FILE: MSMg01no376_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:11 2005
         (612 letters)



>mm_chr1_156242199_156243210
          Length = 1012

 Score = 1178 bits (609), Expect = 0.0
 Identities = 609/609 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacctgcaaaggatagtatcagtaaatgcacactcacacacacgcacatgcaca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 ggaattcacctgcaaaggatagtatcagtaaatgcacactcacacacacgcacatgcaca 825

                                                                       
Query: 64  cgcgcacacacagccttgtaaagatatcaagtattatagctgtggtcaattaactgatca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 cgcgcacacacagccttgtaaagatatcaagtattatagctgtggtcaattaactgatca 765

                                                                       
Query: 124 catagtttattttttagcactggtgaccttataaacatttctttgttcaacttaccctgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 catagtttattttttagcactggtgaccttataaacatttctttgttcaacttaccctgg 705

                                                                       
Query: 184 gtttcttttatcttggacaacacttacccttcattaagaccagaacatagaagaatttct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gtttcttttatcttggacaacacttacccttcattaagaccagaacatagaagaatttct 645

                                                                       
Query: 244 attaagccacaaacacattattataataatctccagtttcctactgcctcctaataaact 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 attaagccacaaacacattattataataatctccagtttcctactgcctcctaataaact 585

                                                                       
Query: 304 tgaatgccaacctccttccttgtagctgaccagagctttccctcctagctatcagagcct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tgaatgccaacctccttccttgtagctgaccagagctttccctcctagctatcagagcct 525

                                                                       
Query: 364 gtatctttctctttaaagggaagttgctttctcaaagcccatgtttctctttgcatcttc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gtatctttctctttaaagggaagttgctttctcaaagcccatgtttctctttgcatcttc 465

                                                                       
Query: 424 cagtacatagcatgactctttgtggaaagtcttcttgcagaattctttagtcatatatct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cagtacatagcatgactctttgtggaaagtcttcttgcagaattctttagtcatatatct 405

                                                                       
Query: 484 cattaccctgcaaaaatatttggtcctcatcacctcaaaacaagagagaggagaagaggg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 cattaccctgcaaaaatatttggtcctcatcacctcaaaacaagagagaggagaagaggg 345

                                                                       
Query: 544 ggcatgacaagcagaagccaggcagggaggtggtatgactgcgcttgtgtttgggcatgc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ggcatgacaagcagaagccaggcagggaggtggtatgactgcgcttgtgtttgggcatgc 285

                    
Query: 604 cttttctct 612
           |||||||||
Sbjct: 284 cttttctct 276


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)