CTTTTAGTTTTTATATTTCTACTGATTACAATTATACATAAAATAACAAA
ACAACACAAAAATAATAAAAATAAAAAAGTATACAAAATAATAATATATA
AAAAATAAATATAAATTCTAAACATATTCTTAAACCAATTTATATTCAAA
ATATTATGCAATTAAAACAAATCTAATGAAAAATTTTTTTATAAATAAAT
TATTTATTTTTTTCATAAATATTTATATACTATCCATAAATCTTTTTCAA
ATTCCAAAATATTTTTTCACGATTTTCCATCTCTTCTTCAAATCTTTCTT
AAACACGATATCGCATACTCTTAAATATAACAANACGAAAAAAAACAACA
CAACAACTAATTATACTCAAAAATAAAACATACAACACACCTAAAAAACA
CAAAACACATTAATCATTAAAACAATTCCTCACTATATTACCACAAACAA
CAAATTTTTAAACATTAACCAAAAACTTTAAAAAACCTATATNTCCTCTC
NCCNNNTACTCCCTCCAAAATACTATATCCAATTATAAACAAATTAATTT
ACACCCTCAATTTTAAATAACTCTCACACCNTAATAAACACAAAATTTTA
AAAAATTTATAAATAAATTATATCCACAATATTTCCCAATNCTCCCCACA
CTTTTTAAACCCCCCNGNCNNNNNNNNCNCNCNTCNNTTCCAAAANNTTA
AACANCCAAAAATATTTTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
ATGGGGGGNGAAGGNGGNGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCNGNGNGNNGGCAGGNGGGNGCGTCANNNNNNNNCCCCNCNCNC
TATAACATCCACTCTATATTATCTNATGTCGCNCGGNCCCNGNCCTCTTN
NTATNNCNGNNCAACNTNATTCTANACGTTAAATGTGGGGGNGCGTTNCC
AGTTGNGCGTCAANNTGNNACTNGTGG

TTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCCTCCCATATGTGGTATAAGAATGTGGT
TGTCCTTATATCTCTGCTCAAACCTTTTATGAATATTATTCCTAGCTAGG
TCATTATCTGCAGTATGGTTTTAGGTTTCCTTGACAACCACAGGATCTTA
GAATTTCTCAGTATCTTTTTTTTCTCCCACTTGTCACATTTTACATTTTT
GTTCTTATAATTAATCTTTCAAGTAGCTTCACTTTATCTTTATTTTCATG
CTTTCCAAGTTAATTGCCCACATTTTCATATATATTATATATCCCATCTC
TTTGATGGTATTAATTCATTTCACTCTCATGGTAAGAAGTGAACTGATCT
GAACTACAAATGCGTAGGTTCCTCAAATGTGTTCGTTCTCAAGCCAAATA
ATTTATAATAAAACTGGAAATTCAGAAACTGAGATTGTTGCAGATGTCAA
AATTTATATTATTTTGCTTGTTCTTAGATGTAAATATGAAATTTCAGTAC
CTGGTATAGCTTATATGCACTTTGCTTTTAAAAGATGTATATTGTTGTTG
GTATTAATGTCAAATTGCCACAGATTAAAATCATATGAGTAGAGAGTCCA
ACCTGAGGAAGTGTCCTGGTTGATGGAGAAAGACCTCTTCCCCCATTGTG
GGCTAACCTTTCTAATAACTGCTTAGAATTTAAAATGGGATTTG

Query= MSMg01no376_f03.g1 MSMg01no376_f03.g1 CHROMAT_FILE:
MSMg01no376_f03.g1 PHD_FILE: MSMg01no376_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:11 2005
         (515 letters)



>mm_chr1_66206638_66207552
          Length = 915

 Score =  996 bits (515), Expect = 0.0
 Identities = 515/515 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctcccatatgtggtataagaatgtggttgtccttatatctctgctcaaaccttttatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tcctcccatatgtggtataagaatgtggttgtccttatatctctgctcaaaccttttatg 656

                                                                       
Query: 61  aatattattcctagctaggtcattatctgcagtatggttttaggtttccttgacaaccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aatattattcctagctaggtcattatctgcagtatggttttaggtttccttgacaaccac 596

                                                                       
Query: 121 aggatcttagaatttctcagtatcttttttttctcccacttgtcacattttacatttttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aggatcttagaatttctcagtatcttttttttctcccacttgtcacattttacatttttg 536

                                                                       
Query: 181 ttcttataattaatctttcaagtagcttcactttatctttattttcatgctttccaagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ttcttataattaatctttcaagtagcttcactttatctttattttcatgctttccaagtt 476

                                                                       
Query: 241 aattgcccacattttcatatatattatatatcccatctctttgatggtattaattcattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aattgcccacattttcatatatattatatatcccatctctttgatggtattaattcattt 416

                                                                       
Query: 301 cactctcatggtaagaagtgaactgatctgaactacaaatgcgtaggttcctcaaatgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cactctcatggtaagaagtgaactgatctgaactacaaatgcgtaggttcctcaaatgtg 356

                                                                       
Query: 361 ttcgttctcaagccaaataatttataataaaactggaaattcagaaactgagattgttgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ttcgttctcaagccaaataatttataataaaactggaaattcagaaactgagattgttgc 296

                                                                       
Query: 421 agatgtcaaaatttatattattttgcttgttcttagatgtaaatatgaaatttcagtacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 agatgtcaaaatttatattattttgcttgttcttagatgtaaatatgaaatttcagtacc 236

                                              
Query: 481 tggtatagcttatatgcactttgcttttaaaagat 515
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 tggtatagcttatatgcactttgcttttaaaagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)