BAC Information

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BAC

Clone NameMSMg01-376F07
Chromosome1 (Build37)
Map Location 42,768,330 - 42,938,467
singlet/doubletdoublet
Overlap geneMrps9
Upstream geneLOC383634, LOC666582, 2610017I09Rik, Pou3f3
Downstream geneGpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2, 1500015O10Rik, Uxs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376F07.T7 (MSMg01no376_f07.b1)MSMg01-376F07.TJ (MSMg01no376_f07.g1)
ACCAG481672AG481673
length754759
length of high quality
(start - end)		535 (45 - 579)478 (71 - 548)
definitionCHROMAT_FILE: MSMg01no376_f07.b1 PHD_FILE: MSMg01no376_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:12 2005CHROMAT_FILE: MSMg01no376_f07.g1 PHD_FILE: MSMg01no376_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,937,937 - 42,938,467)(42,768,330 - 42,768,807)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTAGTCTTAGTTAACAGCACTGCTTTTTAATCTGTCAGTGCTAAG
TAATCGGTACAGAAAGGTTCAAGGTCATCAAATCCACTTACTGGACAACA
GGTTCTTCAACATAAATTAACATTATTTTCTCACTGAATCATTTTCCAGG
CCCTCCCAATTCCAGGCTGTCTAACATCAATGCTCCTTCTTGGTTCTGTC
ATCAACCTGGCATGTATCTTTATTTTCCCCCAATATTTTTACCACTTTAC
AGTACATGTGTTTTGTTAACTCAATCTAGAAGCTTCCATCATTCAGTAAA
CCAAATGGTAGTAAAGTACAAGTGCCATAATTTACCCAAATTTAAAGTTC
ATTGTTAATTTCTAAATACCTACAAACTGATTTATCCTATAAGAAATATA
GTAAGATTGAGAACAGAGAGCAGAACTTCTGCTATTTCTAAAGAAGCATT
GTTAAATACACTTAGCTGCAATGTCAGACAATTCTAGCAATAGTGGCAAA
TTTTCAAAATTATACATGGGCATTTTGCAGCAACAGCCTGGAGCTTTGGN
GNCCATCTATATTATTCAATACATATTCTATCTGCTAGTATAATGAGCCC
ATGATACTGAAAAAGGGGAATGCTTTGAAAAAATCCAAAAGCCCTCCAAG
GCAAATAAGAACCAATTTACCCTATCTTAAAAGGAACTGAACGAAAAAAA
GGAA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCACGTCAACTCTTACCTGTGGAGGACACTG
TCCTTCCCTGTTGCACTTCTTGGCCATCCCACCATGAGAGACACCCCACT
GTAGAGCAATTAACTCTGACATAATAGGAGTGGGGAGGAGGCCCACGGAC
TTCTCATAAGGGAAGAGGCCACCCAGTGCTCAGAAATAATCAAAAGCTTT
AACGCTGCTGAGCAGAGGGGCTGCTAATCCCAAGCAGCTCAAGTGTGGGC
CACACAGCCTAGTCATCTATGCCCACAGCAGCCTGGCAGGTATCTCAGAA
GTAGATGCACGTTGGGACTGTGGGCTTCCACCCAGGAGCTGAGGATCTGG
GTAGGTGTCTTGAGCAAGACAGACTTCATTCTCCTTGCCCTGGACACCCA
GATGCTCTAGAAAGCCAGGACTGTGAGCAGAGGTGACATAAGAAATAACT
GGCCCCTTCCAACTGCACCACTGCTCACCTTGCCTCTTTCCTAGAGGCGG
AAGAGCCTTTCTTTGTAAGTTGCTCCGNTTTTCTTACTGTGGACAGCAAT
TTAATTTCCTCCCTTTGCCCCAAGCCCTGCACACCCCACTGAACAGGGAT
TTCCCCTTGGGGATAACAAGAAGGCTGGCATGGATACTCAAGGAAATGGC
GGGACAGCCTCCCGGAAGTAACCCTTATAATGGGGTATAAATTTTCTGAA
CATTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_f07.b1 MSMg01no376_f07.b1 CHROMAT_FILE:
MSMg01no376_f07.b1 PHD_FILE: MSMg01no376_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:12 2005
         (535 letters)



>mm_chr1_42937733_42938667
          Length = 935

 Score = 1011 bits (523), Expect = 0.0
 Identities = 529/531 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttagtcttagttaacagcactgctttttaatctgtcagtgctaagtaatcggt 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 735 gaattctttagtcttagttaacagcactgctttttaatctgtcagtgctaagtaattggt 676

                                                                       
Query: 65  acagaaaggttcaaggtcatcaaatccacttactggacaacaggttcttcaacataaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 acagaaaggttcaaggtcatcaaatccacttactggacaacaggttcttcaacataaatt 616

                                                                       
Query: 125 aacattattttctcactgaatcattttccaggccctcccaattccaggctgtctaacatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aacattattttctcactgaatcattttccaggccctcccaattccaggctgtctaacatc 556

                                                                       
Query: 185 aatgctccttcttggttctgtcatcaacctggcatgtatctttattttcccccaatattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aatgctccttcttggttctgtcatcaacctggcatgtatctttattttcccccaatattt 496

                                                                       
Query: 245 ttaccactttacagtacatgtgttttgttaactcaatctagaagcttccatcattcagta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttaccactttacagtacatgtgttttgttaactcaatctagaagcttccatcattcagta 436

                                                                       
Query: 305 aaccaaatggtagtaaagtacaagtgccataatttacccaaatttaaagttcattgttaa 364
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaccaaatggtagtacagtacaagtgccataatttacccaaatttaaagttcattgttaa 376

                                                                       
Query: 365 tttctaaatacctacaaactgatttatcctataagaaatatagtaagattgagaacagag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tttctaaatacctacaaactgatttatcctataagaaatatagtaagattgagaacagag 316

                                                                       
Query: 425 agcagaacttctgctatttctaaagaagcattgttaaatacacttagctgcaatgtcaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agcagaacttctgctatttctaaagaagcattgttaaatacacttagctgcaatgtcaga 256

                                                              
Query: 485 caattctagcaatagtggcaaattttcaaaattatacatgggcattttgca 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 caattctagcaatagtggcaaattttcaaaattatacatgggcattttgca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no376_f07.g1 MSMg01no376_f07.g1 CHROMAT_FILE:
MSMg01no376_f07.g1 PHD_FILE: MSMg01no376_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:12 2005
         (478 letters)



>mm_chr1_42768130_42769007
          Length = 878

 Score =  893 bits (462), Expect = 0.0
 Identities = 474/478 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacgtcaactcttacctgtggaggacactgtccttccctgttgcacttcttggccatccc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 cacgtcaactcttacctgtggaggacactgtccttccctgttgcacttcttggccaaccc 260

                                                                       
Query: 61  accatgagagacaccccactgtagagcaattaactctgacataataggagtggggaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accatgagagacaccccactgtagagcaattaactctgacataataggagtggggaggag 320

                                                                       
Query: 121 gcccacggacttctcataagggaagaggccacccagtgctcagaaataatcaaaagcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccacggacttctcataagggaagaggccacccagtgctcagaaataatcaaaagcttt 380

                                                                       
Query: 181 aacgctgctgagcagaggggctgctaatcccaagcagctcaagtgtgggccacacagcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacgctgctgagcagaggggctgctaatcccaagcagctcaagtgtgggccacacagcct 440

                                                                       
Query: 241 agtcatctatgcccacagcagcctggcaggtatctcagaagtagatgcacgttgggactg 300
           || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 agccatctatgcccacagcagcctggcaggtatctcagaagtagatgcatgttgggactg 500

                                                                       
Query: 301 tgggcttccacccaggagctgaggatctgggtaggtgtcttgagcaagacagacttcatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggcttccacccaggagctgaggatctgggtaggtgtcttgagcaagacagacttcatt 560

                                                                       
Query: 361 ctccttgccctggacacccagatgctctagaaagccaggactgtgagcagaggtgacata 420
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctccttgccctggacacccagattctctagaaagccaggactgtgagcagaggtgacata 620

                                                                     
Query: 421 agaaataactggccccttccaactgcaccactgctcaccttgcctctttcctagaggc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaaataactggccccttccaactgcaccactgctcaccttgcctctttcctagaggc 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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