NTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTGCGAAGAAGCTGTGTCTGCACAGGTTGATTGACAGATGGAT
TAAAATATTAATGATGTAGAGGGGTTGGAATGTTTCAGGTTCAGAGCTTC
AATACAATTTATCTTGACCCATATTTATTCTACTTTCCCTGTTATTAACC
AAAGAAAATGGACGTAGTTTCCTGAGAGTTAAAAAAAAAAAAACCTTTGG
AATGTATTAACTAACAAAACCCTAGTTTGTCAACAATAAAGGGTCTAAGG
GTGTTGTCAGACAATACCCAAGGTCTGCAACAGAGTTCTTCCCATCTTGC
TGTAACTTATCTGATGTTCCCACCAGTGTACTTAAAATGTGTCTTATTTT
ATGGTGTTGCTTGTTCTGTTACCATTGAAAATAACATGGCTTCTTTGTTT
TTCAGATTTTTTTAAATTATTTTTTTATTTACGTTTCAAATGTTATCCTC
TTTCCTGGTTTCCCCTCTGAAAATACCTTATCCTCTCCCCCCTCCCCCTG
GTCTCCAACCCACCCATTCCTGCTTTCCTGGCCAGGCATTCCCCTATGCT
AGGGTATAAAAACTTCATAGGACCAGGGCTTCTCCTTTCCTTGATGACCA
TTTAGACCATCCTCTGCTATTATGCAGCTAGAGCCCCAGGTCCCCCGGTG
GTTTCTTTTATGGGGGGTTATCCCCCGGAATCCGGGGGTTACGGTAAGTC
AAATGT

NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGTCTGTCTGTCTCTCTCTCCATC
TGTCTATGTCTCTGACTGTGTCTCTGACTCTGTCTATCATATATATCCTC
CTTCAGGACTATCTTTCCACTGCAGTTTTTTGGGGGATTGCTATTTCGGA
GGGATACAGAATGTTCAACAAAACGATGCAAACTCTGGTCCATCTTTATG
GTGAATTTTCTTGCAACGTGCATGTCTCCAAAGTCATAACATGCTGCTTG
AACTCCCGTTCAGGAAGAGCTCTGACAAATCTCCTCAAGAATATCAGAAG
AAACTAAGAAGTTTGAAAGAAGATGGCACAGTACTTGGTTGTCTTGTAGG
GAGTCAGAGCTGAGGACTGGCTCTAAGATTCTGGGTTCTTCCTCAACTTG
GAAAAAGATTTGAATGCACAGAGGAAGTAAAGACTCAGAAGAGGTGAAAA
TAGGCCTTCACTCTGAAGCAGAGAGCAGAGAGCAGAGAACCATTAAGGAT
GCTTGCTCCTCTAGGGCGTTCTTGTGTTCGTTCCTCCTCTCTCCAATCAG
CCCCAGATGGTCTGGCCCAAATACAGAGNAAGGGGGCTTGTCCCAAGGTC
TTGTTAGGAGAAAATTTTTGTTGCATGGGCTTTGTTAAAACATTCCCCTG
GTACCTGGGGAAATATTCTTTCTTCCCTCCCCCCTTGGTAG

Query= MSMg01no376_f24.g1 MSMg01no376_f24.g1 CHROMAT_FILE:
MSMg01no376_f24.g1 PHD_FILE: MSMg01no376_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:15 2005
         (491 letters)



>mm_chr1_126953772_126954662
          Length = 891

 Score =  853 bits (441), Expect = 0.0
 Identities = 476/491 (96%), Gaps = 7/491 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtctgtctgtctctctctccatctgtctatgtctctgactgtgtctctgactctgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtctgtctgtctctctctccatctgtctatgtctctgactgtgtctctgactctgtc 260

                                                                       
Query: 61  tatcatatatatcctccttcaggactatctttccactgcagttttttgggggattgctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatcatatatatcctccttcaggactatctttccactgcagttttttgggggattgctat 320

                                                                       
Query: 121 ttcggagggatacagaatgttcaacaaaacgatgcaaactctggtccatctttatggtga 180
           | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcggagggatacggaatgttcaacaaaacgatgcaaactctggtccatctttatggtga 380

                                                                       
Query: 181 attttcttgcaacgtgcatgtctccaaagtcataacatgctgcttgaactcccgttcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttcttgcaacgtgcatgtctccaaagtcataacatgctgcttgaactcccgttcagg 440

                                                                       
Query: 241 aagagctctgacaaatctcctcaagaatatcagaagaaactaagaagtttgaaagaagat 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 aagagctctgacaaatctcctcaagaataccagaagaaactaagaagtttgaaagaagat 500

                                                                       
Query: 301 ggcacagtacttggttgtcttgtagggagtcagagctgaggactggctctaagattctgg 360
           ||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 501 ggcacagtacttgcttgtcttgtagggagtcagagctgaggagtggctctaagagtctgg 560

                                                                       
Query: 361 gttcttcctcaacttggaaaaagatttgaatgcacagaggaagtaaagactcagaagagg 420
           |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttcttgctcaagttggaaaaagatttgaatgcacagaggaagtaaagactcagaagagg 620

                                                                       
Query: 421 tgaaaataggccttcactctgaagcagagagcagagagcagagaaccattaaggatgctt 480
           |||||||||||||||||||||| |      ||||||||||||||||||||||||||||||
Sbjct: 621 tgaaaataggccttcactctga-g------gcagagagcagagaaccattaaggatgctt 673

                      
Query: 481 gctcctctagg 491
           |||||||||||
Sbjct: 674 gctcctctagg 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)