BAC Information

Click to search

BAC

Clone NameMSMg01-376G23
Chromosome1 (Build37)
Map Location 32,730,106 - 32,730,512
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666056, LOC100041238, Khdrbs2, EG408191
Downstream geneEG633498, LOC213711, LOC100040828, EG666108, Prim2, 1700001G17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376G23.T7 (MSMg01no376_g23.b1)MSMg01-376G23.TJ (MSMg01no376_g23.g1)
ACCAG481752AG481753
length759763
length of high quality
(start - end)
440 (47 - 486)407 (79 - 485)
definitionCHROMAT_FILE: MSMg01no376_g23.b1 PHD_FILE: MSMg01no376_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:20 2005CHROMAT_FILE: MSMg01no376_g23.g1 PHD_FILE: MSMg01no376_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTATCTTTGTACCCCATTTTTAATGGGGTTATTTGAATT
TCTGGAGTTCAGCTTCTTTAGCTCTTTGTATATATTGGATATTAGTACCC
TATGAGATTTAGGATTGGTTAAAATTCTTTCCCAATCTGTTGATGGTCTT
TTTGTCTTATTGACAGTATCTTTTGCCCTATAGAAGCTTTGCAATTTTAT
GAGGTCCCATTTGTTGACTCTTGATCTTACAGCACAGGCCATTGCTGTTC
TATTTAGGAATATTTCCCCTGTGCCCATATCTTCGAGGGTTTAGTACTTT
CTTTAACTCCTCAATTGGGGTCCCTAGGCTCAGTCCAATGATTGGCTGCA
AGCATCTGCATCTGCATTGGTCAGGCACTGAAAGAGTCTCTTGGGGGACC
TCTGTGCCAGCAAGCCTGTCAGCAAGCACTTCTTGACATCAGCCATATAG
TGAAGCAACCTGAAAGAGACTCTGGGATGCCGTTTCAAATGCAGCCTATG
GTACCGAATAACCCTTTGGAACAGGAGACTTACCTTCCTCTTTTGTTACA
TAAAAACAAACCCAACTTTCTTATATGGTATAAATCGGAAAGAAATTTCC
ATGGACTTTTCCTAAGCCCCTTTTTGGTTTAACAATTGGCTTGGTTTAAC
ACCCCCCCCCCTTTTATTTCACATTTTTTTTTTTAAAAACTCCCCAAAAA
ATTCCACGG
NNGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTTTCACAAAACCCCATAA
ATTTAAGGTATTATTATACCTGACTCCCGGCTTCCTGTTCCCAGAAAGCA
CCTACATAAAGCTAAGTACACAGCCTTTTAGATACAAGTATGTAATAAAT
AATCAAGTACCATGAATTTTAATAAAAATGAAAGTGTACTAGGAAATTGT
GTGTCTCAAACAATAATCATGATCAGTTCTTACTGAAGACATGCTTTCTT
TGTATTGGTGTGTCTACGTATATTCTTGCAAACTAAGATCCAATTTTCAG
CTGTTCTCCCTTACTCTATTCAATAATACACACAACTGAAATGTGCATTA
TCTTTTATTATAGTTAAGATACTCAAGTGAAAGTAAACACAGAAATAAAG
AGCANACTACATTTGGAGAGAAATGTAATAAGGGTCCATTACAAGTGCAA
GAGCATGAGAAAGAAGAAGGGAGTTTCTCCTCCATCTCTAGAGCAAGTGA
TGTCTCAAGTCTCTACCACATTGATCTTGTCCTTTAAGACCATAAATACC
CGGATTTCCCGCGGTAAGTTCCTGGGCCTTAAACCCCTGGGCCCTAAAAG
GTAATTGTTGGTTTGGGAAACCCCCCCCAGGACAAATTTTTACCCCCCTT
TCTTAAAAAAAAGGGGGTTCTTTTTTGGGGATTTTAAAAACTTAAAATTT
TTCTAGGGGGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_g23.g1 MSMg01no376_g23.g1 CHROMAT_FILE:
MSMg01no376_g23.g1 PHD_FILE: MSMg01no376_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:20 2005
         (407 letters)



>mm_chr1_32729906_32730712
          Length = 807

 Score =  766 bits (396), Expect = 0.0
 Identities = 404/407 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttttcacaaaaccccataaatttaaggtattattatacctgactcccggcttcctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttttcacaaaaccccataaatttaaggtattattatacctgactcccggcttcctgt 260

                                                                       
Query: 61  tcccagaaagcacctacataaagctaagtacacagccttttagatacaagtatgtaataa 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 tcccagaaagcacctacataaagctaagtacacagccttctagatacaagtatgtaataa 320

                                                                       
Query: 121 ataatcaagtaccatgaattttaataaaaatgaaagtgtactaggaaattgtgtgtctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataatcaagtaccatgaattttaataaaaatgaaagtgtactaggaaattgtgtgtctca 380

                                                                       
Query: 181 aacaataatcatgatcagttcttactgaagacatgctttctttgtattggtgtgtctacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaataatcatgatcagttcttactgaagacatgctttctttgtattggtgtgtctacg 440

                                                                       
Query: 241 tatattcttgcaaactaagatccaattttcagctgttctcccttactctattcaataata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatattcttgcaaactaagatccaattttcagctgttctcccttactctattcaataata 500

                                                                       
Query: 301 cacacaactgaaatgtgcattatcttttattatagttaagatactcaagtgaaagtaaac 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacacaactgaaatgtgcatcatcttttattatagttaagatactcaagtgaaagtaaac 560

                                                          
Query: 361 acagaaataaagagcanactacatttggagagaaatgtaataagggt 407
           |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 acagaaataaagagcaaactacatttggagagaaatgtaataagggt 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)