Query= MSMg01no376_j02.b1 MSMg01no376_j02.b1 CHROMAT_FILE:
MSMg01no376_j02.b1 PHD_FILE: MSMg01no376_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:29 2005
(614 letters)
>mm_chr1_187095704_187096715
Length = 1012
Score = 1067 bits (552), Expect = 0.0
Identities = 592/606 (97%), Gaps = 2/606 (0%)
Strand = Plus / Plus
Query: 5 gaattcaggacctctggaagagcagtcagtgctcttaaccactgagccatctctccatgc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggacctctggaagagcagtcagtgctcttaaccactgagccatctctccatgc 264
Query: 65 atgtcttttgggactttctgagatgtgctgcggtcccagtcgttacggtgtcaacagacg 124
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 atgtcttttgggactttttgagatgtgctgcggtcccagtcgttatggtgtcaacagacg 324
Query: 125 ctttgcaggagctttccccaaatcggcgcctcagtcagtgtgtgcttcatctgtctcatg 184
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 ctttgcaggagctttccccaaatcggcgcctcagtcagtgtgtgcttcgtctgtctcatg 384
Query: 185 ccctccagagctggagagccaggaatgctagtgagtagcaggctttgtgagcatgtgcga 244
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccctccagagctggagtgccaggaatgctagtgagtagcaggctttgtgagcatgtgcga 444
Query: 245 ggccctctgctccacccttagcatagcaaccaagcacacaagcctcttaagcctccttcc 304
||||||| ||||||||||||||| ||||||||||||||| ||| ||||||||||||||
Sbjct: 445 ggccctcggctccacccttagcacagcaaccaagcacacgagc--cttaagcctccttct 502
Query: 305 tggaggctgtgtgatgtaacgaggcgtacttcttccgtgtcacttgaggtatggattgga 364
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tggaggctgtgtgatgtaatgaggcgtacttcttccgtgtcacttgaggtatggattgga 562
Query: 365 tacttactgtttatagggacactcttctgttcccttacccttttatttaaaacaaaaatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tacttactgtttatagggacactcttctgttcccttacccttttatttaaaacaaaaatt 622
Query: 425 cggcataagatgcaaggaatgatatatagagtccacgtagttccctaagcttggggcagg 484
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 623 cggcataagatgcaagaaatgatatatagagtccacgtagttccctaagcttggggcggg 682
Query: 485 gctctgtgtctgatgactttccctcagcagcgctctgctcacggctcatttcatttgctg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gctctgtgtctgatgactttccctcagcagcgctctgctcacggctcatttcatttgctg 742
Query: 545 tgtaggtatcgcgctgatgatgtggaatacgttcttggtgaaaaggttttctgctgctac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tgtaggtatcgcgctgatgatgtggaatacgttcttggtgaaaaggttttctgctgctac 802
Query: 605 ctacct 610
|||||
Sbjct: 803 ttacct 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1012
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1002
Effective search space: 605208
Effective search space used: 605208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_j02.g1 MSMg01no376_j02.g1 CHROMAT_FILE:
MSMg01no376_j02.g1 PHD_FILE: MSMg01no376_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:29 2005
(505 letters)
>mm_chr1_187271791_187272695
Length = 905
Score = 772 bits (399), Expect = 0.0
Identities = 429/443 (96%), Gaps = 7/443 (1%)
Strand = Plus / Minus
Query: 67 tcagagacatcgattcctgagggctcagagacatcgattcctgagggctcagagacatcg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 tcagagacatcgattcctgagggctcagagacatcgattcctgagggctcagagacatcg 846
Query: 127 attcctgagggctcagagacagcgattcctgagggctcagagacaagctgccctgcctcc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 attcctgagggctcagagacagcgattcctgagggctcagagacaagctgccctgcctcc 786
Query: 187 tgctccatgacttcttcactgggacacactgcgtcctcgaagtctcagctcaaaccagcc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tgctccatgacttcttcactgggacacactgcgtcctcgaagtctcagctcaaaccagcc 726
Query: 247 cttccttccctgaatggcgtttgtcaggtgttcctcacagcaaagagaagaacaatgaat 306
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 cttcctttcctgaatggcgtttgtcaggtgttcctcacagcaaagagaagaacaatgaat 666
Query: 307 aggggaactcttgtactcaaggtctgcctgtggaggtgtgggcatgatttgtgactgggg 366
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 665 aggggaactcttgtactcaaggcctgcctgtggaggtgtgggaatgatttgtgactgggg 606
Query: 367 caagaagaggagagcattagaggccaaaccaggaagttcggaaacacctcccattcagag 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 caagaagaggagagcattagaggccaaaccaggaagttcggaaacacctcccattcagag 546
Query: 427 ttcaacactacatactgtatcatgtgaagtctgatgggtgc-ggngtggg------gggg 479
|||||||||||||||||||||||||||||||||||||| || || | ||| ||||
Sbjct: 545 ttcaacactacatactgtatcatgtgaagtctgatgggggcaggggggggcaaggggggg 486
Query: 480 aagtantcagctgtgagacttcc 502
||||| |||||||||||||||||
Sbjct: 485 aagtagtcagctgtgagacttcc 463
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
