BAC Information

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BAC

Clone NameMSMg01-376J03
Chromosome1 (Build37)
Map Location 89,513,369 - 89,681,677
singlet/doubletdoublet
Overlap geneInpp5d, Atg16l1
Upstream geneNppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2
Downstream geneSag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376J03.T7 (MSMg01no376_j03.b1)MSMg01-376J03.TJ (MSMg01no376_j03.g1)
ACCAG481856AG481857
length741746
length of high quality
(start - end)		584 (44 - 627)552 (75 - 626)
definitionCHROMAT_FILE: MSMg01no376_j03.b1 PHD_FILE: MSMg01no376_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:29 2005CHROMAT_FILE: MSMg01no376_j03.g1 PHD_FILE: MSMg01no376_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(89,681,100 - 89,681,677)(89,513,369 - 89,513,727)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTAAAGCCTTGAAATCCAAAAAAGCAGAGAGGAGGAAGCAGGAGGA
GAATGTTTTAAAAGCTCTTGCCTCCGGCTCTCCAGTGCTGGGATTAACAG
GTATACCGCACCACGTCTAACTCAAAGTAACAAAGACAGGACTTTCTTTT
ATTCATGCCACTGAAAGTCAGTCTGTACTTAAAGTGAGAAAAGACAGGGC
CACTGCAGGCATAATTTACAAAAGGAAGCATCAGAATTCCATATACACAA
TTAGATGCTATGGGGTGTTTAAAATAAGAGGTCTCAGCTTAAAATGTCAG
ATCATAGCCAAGGACGCCAGCACTCCCAACAACCAAATCCCTTGTGACCA
AGCTGTTGGATGCCAACCAGTGCCTTCTCTGGACTTGTCAGGGAAGACAG
AATGGAGACATCACTGCATGTCAGCTACTGTGTTTGCCCATGATAGCACT
ACTAGAGCATGATGGGAGAGAGGTAAGCAGCTGGGGATGTAGGCTGCTGG
GAGGCGACCTCGGAAGTCAGACCTTTTACTATTCATCACTGACCTCTTTC
CAAGGTAGGCTTTTTCCCTCCCTCCCTCCCTCCCTNNNCCTTTTCCTTCT
TNCTTTTTTTCCCTTTCTCTTTTTCTCTCTTCTTCCTCCTCTCCTTCTTT
CTCCCTCTCCCTTCCTTCTCCTCCCTTTTTCTCCTTTTTTT

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTATGGGACCCATCTGTCATGACCT
GATTATCTTGGGAATGCCCTAGCAGACACTCCCAGAGGTGTGCTTTACTG
ATTTCCCAAGTGCTTCTTAGTCTAATAAAATTGACAATCAAGAGTAACCA
CAAGTGATGCTAAGAGATGCCAAGGGGACTTACCCATCAGTGGGATGGTC
CTGGATGCTGATGGATTGATAAAGTCTAGTTGGTCAAGGCACAGAGAGAC
TAAGATTGTGATGAGGATGGATCAGGATCCGTGTGGTAGACTCTGGGGAC
TTTGGGATAAGGGCAATGACCCAGTTGGCAGAGGTGTTCAAGGAAGAAAG
GAGAGGGTTCAAGGATTCATGCAGTACATGTGTTAGACAGAGATTTCCTA
AGGAGGGCTGCATGGGGTACTGTGAACTTGAGAGGACTCCATGAAGGGTC
CCTTGTAGAGTTAGAGTTAACATCTTCAGCCTCCAGGTGGCAAAATCAGA
ATGTAGACGTGAGCTCTTGTCGAGACCATGTCCCCTCCCTCTGGCTCAGG
ACCTGGCTGGAGTACTCTACCCACTCTCAAATTTCCCACCAGCTGTGCCC
TGCAGGCCCCAAGCTCCTGCCATGGATGACATTAACAAGCTTCCATGGTC
CTCAAACACCAGAGCTCCTTTTCGAATTACACCTTGCACCCATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_j03.b1 MSMg01no376_j03.b1 CHROMAT_FILE:
MSMg01no376_j03.b1 PHD_FILE: MSMg01no376_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:29 2005
         (584 letters)



>mm_chr1_89680771_89681754
          Length = 984

 Score = 1102 bits (570), Expect = 0.0
 Identities = 576/578 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtaaagccttgaaatccaaaaaagcagagaggaggaagcaggaggagaatgtt 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 907 gaattctgtaaagccttgaaatccaaaaaagcagagaggaggaagcaggaggaggatgtt 848

                                                                       
Query: 65  ttaaaagctcttgcctccggctctccagtgctgggattaacaggtataccgcaccacgtc 124
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 847 ttaaaagctcttgcctccggctctccagtgctgggattaacaggtgtaccgcaccacgtc 788

                                                                       
Query: 125 taactcaaagtaacaaagacaggactttcttttattcatgccactgaaagtcagtctgta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 taactcaaagtaacaaagacaggactttcttttattcatgccactgaaagtcagtctgta 728

                                                                       
Query: 185 cttaaagtgagaaaagacagggccactgcaggcataatttacaaaaggaagcatcagaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 cttaaagtgagaaaagacagggccactgcaggcataatttacaaaaggaagcatcagaat 668

                                                                       
Query: 245 tccatatacacaattagatgctatggggtgtttaaaataagaggtctcagcttaaaatgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tccatatacacaattagatgctatggggtgtttaaaataagaggtctcagcttaaaatgt 608

                                                                       
Query: 305 cagatcatagccaaggacgccagcactcccaacaaccaaatcccttgtgaccaagctgtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cagatcatagccaaggacgccagcactcccaacaaccaaatcccttgtgaccaagctgtt 548

                                                                       
Query: 365 ggatgccaaccagtgccttctctggacttgtcagggaagacagaatggagacatcactgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ggatgccaaccagtgccttctctggacttgtcagggaagacagaatggagacatcactgc 488

                                                                       
Query: 425 atgtcagctactgtgtttgcccatgatagcactactagagcatgatgggagagaggtaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 atgtcagctactgtgtttgcccatgatagcactactagagcatgatgggagagaggtaag 428

                                                                       
Query: 485 cagctggggatgtaggctgctgggaggcgacctcggaagtcagaccttttactattcatc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cagctggggatgtaggctgctgggaggcgacctcggaagtcagaccttttactattcatc 368

                                                 
Query: 545 actgacctctttccaaggtaggctttttccctccctcc 582
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 367 actgacctctttccaaggtaggctttttccctccctcc 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no376_j03.g1 MSMg01no376_j03.g1 CHROMAT_FILE:
MSMg01no376_j03.g1 PHD_FILE: MSMg01no376_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:30 2005
         (552 letters)



>mm_chr1_89513169_89514120
          Length = 952

 Score =  656 bits (339), Expect = 0.0
 Identities = 354/359 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attatgggacccatctgtcatgacctgattatcttgggaatgccctagcagacactccca 60
           ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 attatgggacccatctgtcgtgacctgattatcttggaaatgccctagcagacactccca 260

                                                                       
Query: 61  gaggtgtgctttactgatttcccaagtgcttcttagtctaataaaattgacaatcaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggtgtgctttactgatttcccaagtgcttcttagtctaataaaattgacaatcaagag 320

                                                                       
Query: 121 taaccacaagtgatgctaagagatgccaaggggacttacccatcagtgggatggtcctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaccacaagtgatgctaagagatgccaaggggacttacccatcagtgggatggtcctgg 380

                                                                       
Query: 181 atgctgatggattgataaagtctagttggtcaaggcacagagagactaagattgtgatga 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 atgctgatggattgataaagcctagttggtcaaggcacagagagactaagactgtgatga 440

                                                                       
Query: 241 ggatggatcaggatccgtgtggtagactctggggactttgggataagggcaatgacccag 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 ggatggatcaggatccgtgtggtagactctggggactttgggataagggcaatgacgcag 500

                                                                      
Query: 301 ttggcagaggtgttcaaggaagaaaggagagggttcaaggattcatgcagtacatgtgt 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttggcagaggtgttcaaggaagaaaggagagggttcaaggattcatgcagtacatgtgt 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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