Query= MSMg01no376_j04.b1 MSMg01no376_j04.b1 CHROMAT_FILE:
MSMg01no376_j04.b1 PHD_FILE: MSMg01no376_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:30 2005
(604 letters)
>mm_chr1_11306831_11307834
Length = 1004
Score = 839 bits (434), Expect = 0.0
Identities = 508/542 (93%), Gaps = 17/542 (3%)
Strand = Plus / Minus
Query: 5 gaattctgtcattagcacaagaaaaaaaaatcgaaaacccaaaaccaaaaaacacaaag- 63
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 543 gaattctgtcattagcacaagaaaaaaaaattgaaaacccaaaaccaaaaaacacaaaga 484
Query: 64 --------------caacaacaac-aaagaaaccaaccaaccaaacaaacaaacaaacaa 108
|||||||||| ||| ||||||||||| |||||||||||||||||||
Sbjct: 483 aacaacaacaacaacaacaacaacaaaaaaaaccaaccaaacaaacaaacaaacaaacaa 424
Query: 109 tatgaatgttctgatgaacaatacactatctacctcagttataaatgagtaagttttgga 168
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 423 catgaatgttctgatgaacaatatactatctacctcagttataaatgagtaagttttgga 364
Query: 169 atcttcaaatgataattaaattaataatggtgcattttatgcctgaatttttttaaacaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 atcttcaaatgataattaaattaataatggtgcattttatgcctgaatttttttaaacaa 304
Query: 229 gtaaaaagtttagcagtgacagatatgttactttgcttgattattgtaatcacatcctaa 288
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 303 gtaaaaagtttagcagcgacagatatgttactttgtttgattattgtaatcacatcctaa 244
Query: 289 aatatatcaaaacagcatagtatatacattaaatatataaaacttttatttgaaaattat 348
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 243 aa-atatcaaaacagcatagtatacacattaaatatataaaacttttatttgaaaattat 185
Query: 349 atacaaataagtctgtggaagaactccaaagcagcagaaatggggtcatatagcaactct 408
||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 184 atacaaataagtctgtgaaagaactccaaagcagcagagatggggttatatagcaactct 125
Query: 409 tatgagctctcacagccaccaaaaccaactccttgggagggaacacatttgtatcaataa 468
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct: 124 tatgagctctcacagccaccaaaaccaactcctttggagggaacacatttgtgtcaatga 65
Query: 469 actaatttcagcctttgattcactagagagagtctggagtgggcatttctgttgcattaa 528
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 64 actaatttcagcctttgatccactatagagaatctggagtgggcatttctgttgcattaa 5
Query: 529 gt 530
||
Sbjct: 4 gt 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_j04.g1 MSMg01no376_j04.g1 CHROMAT_FILE:
MSMg01no376_j04.g1 PHD_FILE: MSMg01no376_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:30 2005
(590 letters)
>mm_chr1_11275476_11276471
Length = 996
Score = 1098 bits (568), Expect = 0.0
Identities = 587/596 (98%), Gaps = 6/596 (1%)
Strand = Plus / Plus
Query: 1 ccatttgaggctgaatatgagcctttcaactgactttccaccagcagagactgtactcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatttgaggctgaatatgagcctttcaactgactttccaccagcagagactgtactcac 260
Query: 61 tttgtattttcttttaagcagaatggatttcttaaactgtaacctagtagcatttgaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgtattttcttttaagcagaatggatttcttaaactgtaacctagtagcatttgaaga 320
Query: 121 accaagataacttggttataaattgtctaaattatttttaaaatacaccagcttccatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accaagataacttggttataaattgtctaaattatttttaaaatacaccagcttccatag 380
Query: 181 ttctgattagaaaatagaatcaagctagtacaaaagacatttaagcagtgataagacaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctgattagaaaatagaatcaagctagtacaaaagacatttaagcagtgataagacaaa 440
Query: 241 cgaaagtcatcaatttgatgtttttctgtcaccttttttggcctgatgcagccaaggtga 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 cgaaagtcatcaatttgatgtttttctgtcaccttttttggcctgatgcagccaagctga 500
Query: 301 cttgtcttaagtttttcagtaa-a-----ttcattagatatgcttttgtagtcatgacca 354
|||||||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct: 501 cttgtcttaagtttttcagtgacagtgtcttcattagatatgcttttgtagtcatgacca 560
Query: 355 ctttatttatcaaaactttactcaaacaaataaaagcaatttcaacccccatggatcttg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttatttatcaaaactttactcaaacaaataaaagcaatttcaacccccatggatcttg 620
Query: 415 tccccaggatttcactatgaactgtcaagcaagccaatgaacaaatagactgaagaagac 474
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccccaggatttcactatggactgtcaagcaagccaatgaacaaatagactgaagaagac 680
Query: 475 aatgcctggctagcttccacaatgcacattgcagacccagtgaatgttctgccttaggaa 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatgcctggctagcttccacaatgcacattgcagacccagtgaatgttctgccttaggaa 740
Query: 535 tcaagggtagaagtttactgtgaggaacttagaaggttgaacagggatcgattaga 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcaagggtagaagtttactgtgaggaacttagaaggttgaacagggatcgattaga 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 996
Length adjustment: 10
Effective length of query: 580
Effective length of database: 986
Effective search space: 571880
Effective search space used: 571880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
