BAC Information

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BAC

Clone NameMSMg01-376L09
Chromosome1 (Build37)
Map Location 161,270,521 - 161,270,739
singlet/doubletsinglet
Overlap geneRfwd2
Upstream gene6430517E21Rik, Astn1, Pappa2, 4930562F17Rik, EG240853, LOC664972
Downstream geneEG620484, Tnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376L09.T7 (MSMg01no376_l09.b1)MSMg01-376L09.TJ (MSMg01no376_l09.g1)
ACCAG481964AG481965
length755768
length of high quality
(start - end)
---209 (280 - 488)
definitionCHROMAT_FILE: MSMg01no376_l09.b1 PHD_FILE: MSMg01no376_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:40 2005CHROMAT_FILE: MSMg01no376_l09.g1 PHD_FILE: MSMg01no376_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTACTATTACCCAGGCCTAAGAAAAGCGATATACACTGAACCAGA
ATATATCATGTAACTAGATGGACACAACCTTTTTCTCTTCCCCCTTAGAT
GCTATATTATAATAGACTACCCTCACCTTCACATTATGCCTTAATCATAG
CACTGACTACCCCCGCTAAATTCTTTAGACATCAGAGAGATGTCAAAGCG
GAGGATCCACCTTACGTCCTCTCGTGCTGATCTGATAAAGAGGGCACAAC
TGTCAAAATAGACGATGGTTCTCCTATGATTCTGTGATGCTTCTTTGTCT
TACATGAGAACCTGGGAAGAACCGGGATGTCGCCCCTACAGACCAGTGCA
TTACTCCCACGTGTCTCCTCTGCGAACGGGGGTCCTATCCACCTATAAGA
CAGATTGTTGTCATGAAAGTGCTGGCCAGAGGCCTGGAACAGATCGTAAT
GTGCCTGACTTTCCCTCCTTTCTGTCAACGTGACTCCTCGCTAATGTACA
CGATGTTTGGTGTTCTCTAGACCCTCTCCTAAGACCCCCTTCATCGCTGA
TACAGTTTGCGAACTGCCTATGCTCTCGAGAATGCAGACTGGAGTGTGGA
CCCTTTCCCCCCTCCTTAAATTCGTAACAATGATTGCCTCGTAGGGGAAT
CTAAAACCAACTTGGTTGTCAAAAATTGGTTGGACCCCCGAAGCCCTCCC
CCCCC
GAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCGCAGTGAGAAACTTGAGTATTAT
ACAGATACTGATCGAAACTTGTAATATATAAGACTATCACTCAAGTCATA
TTAAAAGTATGTACTAACTATTGATGTAAGCTGTTTACACATCCTTGTTA
ACAAATGATAATGTGTCTTTTGTCTGCAGAATGCAGATTACCTACATCTA
CATGGAGGTCTCTGTCTGACTTATGATAGCTGGCTAAGTCCGATCGTTCC
CCTCCATACAACCTTTTGAATTTCCCCTCTAAATACTGTTTTGTTTATCA
TTTATGCAATATTTCTGCTGATTAAATTATACTAGATTATAGAATAAAAC
AAACAAACAAAACCCAAGTTTTCTTCAAGCATTTTGAAGTATTTTATGGA
TTTTGATTGTTTGTGGTTTGACCCTTTCTTAATGTTCTTTATAATAAAGA
CTCTCATCACCTACATTCCTAGATTGGAATTCCTGCCTCTACTATTTAAA
TACAGGCTGGTTTGTAGTTTTTGAAAGTAATTATTACTATTGCCTTATTT
ATTTTGAAAAAAAATCTGTACCTACAATGTGTAATGGAGGCAAAATTTGC
CCCGTTTTTCTTTTTTTTATGGTGTGAGTCAAAAAATACTCCTTCCTTAC
ACTTTCTCGCAATCTTCACCACATATTTTTTGTTCCCTTTCCTATTCTTT
CCTCACACTTACGATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_l09.g1 MSMg01no376_l09.g1 CHROMAT_FILE:
MSMg01no376_l09.g1 PHD_FILE: MSMg01no376_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:40 2005
         (209 letters)



>mm_chr1_161270321_161270929
          Length = 609

 Score =  373 bits (193), Expect = e-108
 Identities = 209/219 (95%), Gaps = 10/219 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggctaagtccgatcgttcccctccatacaaccttttgaatttcccctctaaatactgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggctaagtccgatcgttcccctccatacaaccttttgaatttcccctctaaatactgt 260

                                                                       
Query: 61  tttgtttatcatttatgcaatatttctgctgattaaattatactagattatagaat-aaa 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 tttgtttatcatttatgcaatatttctgctgattaaattatactagattatagaatcaaa 320

                                                                       
Query: 120 ---acaaacaaacaaaa------cccaagttttcttcaagcattttgaagtattttatgg 170
              ||||||||||||||      |||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaacaaacaaacaaaaaaaaaacccaagttttcttcaagcattttgaagtattttatgg 380

                                                  
Query: 171 attttgattgtttgtggtttgaccctttcttaatgttct 209
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttgattgtttgtggtttgaccctttcttaatgttct 419


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)