NNCCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAATAAAAATATGTAGCTTATGAAAGTACCCTAAAACATACCT
AGAACATGAAGAAATTAATTAAATTTCATTTAAAAAACATGCTTAGGTTG
GGCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAAGCAGAGGCAG
GCAGATTTATGAGTTCAAGGCCAGCCTGGTCTACAGAGCTGAGTTCCAGG
ACAGCCAGGGCTATAGAGAGAAACCCTGTCTCAAAAAACCAAAACCAAAA
AACAAAAACAAAAACAAAAACAAAAACAAAAACACATGCTTAGTATAATT
GCCTGCTTATAAAGATTAGGTTGTCAAGACAGCCAAATAAATTACATATG
TCTGTAGTTCAGGATCTCCAGTTCAAGGCCAACATGAGCTACCTGAGACC
TTGTCTCACAAAGAANATGACACAACTAAGAAAAGACAAAATTATATTTA
CCATACCCCCGTAAAGGCCCAAATTATGGCTGGAGAAATGGCTTATTAGT
TAAGAGCACCTACTGCTCTTTCAGAGAACAGAGTTCTGTTCCCATATCTA
CNTCAGAAAACTCATAACTGCCCATTAATTTACCGGCAATAGCTATCAAC
CACTCTTTTTTTAATTTATGGGGACCCGGGACTTGGGGGCCCCCTTTGCT
TACGCCTAAATTAAAAAAAAATTAATTCTTAAAAAATAAAACCCCCCCT

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACTTAGGATTTTGGGGAGAATTA
TTAAGTGATGTTCAGAATGCTTGCTGCATAAAGGCTACCTGAGGTGCATT
GGAATAACTTAGCATTTTAAAATTGAAACTGTGCCTTAAATAAAATCTCA
CAGAGTGGGCTAAAATATGTAAATGTGGAGCTGCTTTTGTTGAGATATAG
AAAGGTGGTGAGGATGGGGGAATCTCTGGAATAAGCAAAGGGAAGCCTGG
AAGCCCAGAGTAGAATTTTTCTCAGCAGGAACCAGAACAGTTAGAAACCC
CTGGAAATGTGGAGATGGTTTGCTAGGGAAAGCACATGCTGCAATGGAGA
CCTGAGTGAAGATCCTCAGAACTGCCAGAATAAAAAGAGCCAGGCAAGCT
GAGTGCACTTGTTACTCCATGCTGGGGGTGTGGAGATGAGGGTGTNNNNN
NNNANNTTGNTTTTTTTTTTTTGGTTTTTTTTTTTTGTTGGTTTGTTTGT
TTTTTTTGTTTTNTGTGGGTGTTGTGTTTGCTTTTGTTTTTCTTTGTTTT
TTTTTGTGTTTTTTTTTGTGTGTGTTTGTTTTTTCTTTTTTTTGTTGTGT
TTTCTTGTTTTTTTTCTGTGTTTTTTTCGTGGTTTTNCTGTTCTTTTTTC
CTTTCTTCCTCCTCTCTTTTTTCTCTTCCTCTTTCCCCTTCTCTG

Query= MSMg01no376_l24.g1 MSMg01no376_l24.g1 CHROMAT_FILE:
MSMg01no376_l24.g1 PHD_FILE: MSMg01no376_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:43 2005
         (411 letters)



>mm_chr1_23158522_23159332
          Length = 811

 Score =  779 bits (403), Expect = 0.0
 Identities = 409/411 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacttaggattttggggagaattattaagtgatgttcagaatgcttgctgcataaaggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aacttaggattttggggagaattattaagtgatgttcagaatgcttgctgcataaaggct 422

                                                                       
Query: 61  acctgaggtgcattggaataacttagcattttaaaattgaaactgtgccttaaataaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acctgaggtgcattggaataacttagcattttaaaattgaaactgtgccttaaataaaat 362

                                                                       
Query: 121 ctcacagagtgggctaaaatatgtaaatgtggagctgcttttgttgagatatagaaaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctcacagagtgggctaaaatatgtaaatgtggagctgcttttgttgagatatagaaaggt 302

                                                                       
Query: 181 ggtgaggatgggggaatctctggaataagcaaagggaagcctggaagcccagagtagaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 301 ggtgaggatgggggaatctctggaataagcaaagggaagcctggaagcccagaatagaat 242

                                                                       
Query: 241 ttttctcagcaggaaccagaacagttagaaacccctggaaatgtggagatggtttgctag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttttctcagcaggaaccagaacagttagaaacccctggaaatgtggagatggtttgctag 182

                                                                       
Query: 301 ggaaagcacatgctgcaatggagacctgagtgaagatcctcagaactgccagaataaaaa 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 181 ggaaagcacatgctgcaatggagacctgagtgaagatcctcagaaccgccagaataaaaa 122

                                                              
Query: 361 gagccaggcaagctgagtgcacttgttactccatgctgggggtgtggagat 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gagccaggcaagctgagtgcacttgttactccatgctgggggtgtggagat 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)