CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTAATTTATTTGTCAGCATTCTTAATGCAAAATACATATATTT
GCATATGTATAATATATGTTATGTATATACATTATATACATATACATATA
TATAATTATTGTACTTGATCTTTTTTTCTGTATCATTATGTAAAAGTAGA
AGCTAAATACTCAGCTCCCAGGAGAGATTCATTCTGTCTCTATATAGGTC
TCTCCATTGTTATATACATATATACATATACATATACATATACATATACA
TATACATATACATACACATACACATACACATACACATATACATATACATA
TACATATACATATACATATACATATACATATACATATACATATACATATA
CATATACATATACATATACATATACATATACATATACATATACATATATG
TTTACTACTCATAGTTGCCAAAATATAAAATTAACCTGCATCCTTCAATA
TGTGAGAAAACATATATTGTCCAATGTAATAGAGTATTATTCGGCCATAA
AAATCAAAATCTTTCATTTGCTTTTTAAATTAGTAGATCTAGAGATATTC
AATGAAATAAGCCAGACATAAAAGAANAGAATCAGTCTGAGTTGGATTTT
CTGAAGATAGGGCCCCCCAGTAGCAGAACACATGAGCAGTCCCAGAAATT
GAGAAGAATTTTGTCAACCTTGAGCCCCTGGAGATTAAAA

NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAATGGTGGT
AATGAAGTGTTCCCGTAAAACAGACTGTTGAGAAGGATCCAGTGTGGATT
CAGAACTCTTCAGCTGGGGAATGGTGGTAATAAAGTGTTCCCGTAAAACA
GACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACTCTTCAGCTGGGG
AATGGTGGTAATGAAGTGTTCCCGTAAAACAGACTGTTGAGAAGGATCCA
GTGTGGATTCAGAACTCTTCAGCTGGGGAATGGTGGTAATAAAGTGTTCC
CGTAAAACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACTCTT
CAGCTGGGGAACAGGTTACTCGTAAGTATAGCTTTACAAGGTAAGTCTGG
CCTTGAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGG
AAATAGCTTTACAAGGTATGTTTGGCCTTGAACTTTCTCTAGTGTTAGGA
GCCTTTTTGTTCCTTTTCACATGTTATCAAGTGGTTAAGGCAGGGCTGAA
AATTCTGGATGAAATTCAGGGCAATCTATCAGAAGTAAAGCGGGGAGAGA
GAGTAGGAGCAAAGAGGAAATATGGTACACCAAATAAGTATACAGGCCTT
TCCACGGGTCTTGAACCTGAGGA

Query= MSMg01no376_p15.b1 MSMg01no376_p15.b1 CHROMAT_FILE:
MSMg01no376_p15.b1 PHD_FILE: MSMg01no376_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:00 2005
         (550 letters)



>mm_chr1_27701223_27702172
          Length = 950

 Score =  673 bits (348), Expect = 0.0
 Identities = 453/546 (82%), Gaps = 88/546 (16%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattaatttatttgtcagcattcttaatgcaaaatacatatatttgcatatgtat 64
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 522 gaattcattaatttatttgtcagcattctaaatgcaaaatacatatatttgcatatgtat 463

                                                                       
Query: 65  aatatatgttatgtatatacattatatacatatacatatatataattattgtacttgatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aatatatgttatgtatatacattatatacatatacatatatataattattgtacttgatc 403

                                                                       
Query: 125 tttttttctgtatcattatgtaaaagtagaagctaaatactcagctcccaggagagattc 184
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tttttatctgtatcattatgtaaaagtagaagctaaatactcagctcccaggagagattc 343

                                                                       
Query: 185 attctgtctctatataggtctctccattgttatatacatatatacatatacatatacata 244
           ||||||||||||||||||||||||||||||                              
Sbjct: 342 attctgtctctatataggtctctccattgt------------------------------ 313

                                                                       
Query: 245 tacatatacatatacatatacatacacatacacatacacatacacatatacatatacata 304
                                                                     ||
Sbjct: 312 ----------------------------------------------------------ta 311

                                                                       
Query: 305 tacatatacatatacatatacatatacatatacatatacatatacatatacatatacata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tacatatacatatacatatacatatacatatacatatacatatacatatacatatacata 251

                                                                       
Query: 365 tacatatacatatacatatacatatacatatacatatatgtttactactcatagttgcca 424
           ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 250 tacatatacatatacatatacatatacgtatacaaatatgtttactactcatagttgcca 191

                                                                       
Query: 425 aaatataaaattaacctgcatccttcaatatgtgagaaaacatatattgtccaatgtaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 aaatataaaattaacctgcatccttcaatatgtgagaaaacatatattgtccaatgtaat 131

                                                                       
Query: 485 agagtattattcggccataaaaatcaaaatctttcatttgctttttaaattagtagatct 544
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 agagtattatttggccataaaaatcaaaatctttcatttgctttttaaattagtagatct 71

                 
Query: 545 agagat 550
           ||||||
Sbjct: 70  agagat 65


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 157
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)