Query= MSMg01no377_a12.b1 MSMg01no377_a12.b1 CHROMAT_FILE:
MSMg01no377_a12.b1 PHD_FILE: MSMg01no377_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:04 2005
(456 letters)
>mm_chr1_55953920_55954776
Length = 857
Score = 833 bits (431), Expect = 0.0
Identities = 446/451 (98%), Gaps = 1/451 (0%)
Strand = Plus / Plus
Query: 5 gaattcactgctttaaccccactaagcagctatcctccccagttcttaccttcagtcctc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgctttaaccccactaagcagctatcctccccagttcttaccttcagtcctc 264
Query: 65 atacaaatgaatgtgaaaactgtcttccacagcccctgaagacggactttaccacttcgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atacaaatgaatgtgaaaactgtcttccacagcccctgaagacggactttaccacttcgt 324
Query: 125 ggtggcaggtttactgtgaagcccacacttgctcacctctatacctgccactcaaaacct 184
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggttgcaagtttactgtgaagcccacacttgctcacctctatacctgccactcaaaacct 384
Query: 185 ctagggtttgtggtgttacagcgttggctactggtgtctccattttattactgtcttctt 244
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 ctagggtttgtggtgttacagcgttggctactgatgtctccattttattactgtcttctt 444
Query: 245 catttgctggcaagctgtggctggctgtcaactggggacctgtggactgagctagctgaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catttgctggcaagctgtggctggctgtcaactggggacctgtggactgagctagctgaa 504
Query: 305 ttctagctgcagcagattggcttaaacctttcccttgtgggttcttgtctctaagactgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttctagctgcagcagattggcttaaacctttcccttgtgggttcttgtctctaagactgt 564
Query: 365 tctaaaataattttttttt-gtctctgtgtactttactaattcattcaatgaaagattct 423
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctaaaataattttttttttgtctctgtgtactttactaattcattcaatgaaagattct 624
Query: 424 ctgaaagagggtctgatatggctgcttgaca 454
||||||||||| |||||||||||||||||||
Sbjct: 625 ctgaaagagggcctgatatggctgcttgaca 655
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 857
Length adjustment: 10
Effective length of query: 446
Effective length of database: 847
Effective search space: 377762
Effective search space used: 377762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_a12.g1 MSMg01no377_a12.g1 CHROMAT_FILE:
MSMg01no377_a12.g1 PHD_FILE: MSMg01no377_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:05 2005
(437 letters)
>mm_chr1_56031120_56031957
Length = 838
Score = 762 bits (394), Expect = 0.0
Identities = 417/430 (96%), Gaps = 11/430 (2%)
Strand = Plus / Minus
Query: 1 acttatctgagcatttccaaaccaaaacccaaacaagagcttatgccatgggctcagcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 acttatctgagcatttccaaaccaaaacccaaacaagagcttatgccatgggctcagcca 364
Query: 61 gctgtcctttcctgtcctgtcacgtttgcttattatgaggatctccaacgtttcatcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gctgtcctttcctgtcctgtcacgtttgcttattatgaggatctccaacgtttcatcttc 304
Query: 121 tgtacacaaagacaaagtgctaagtaccttatatgataaaggcttaagcacagttttaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgtacacaaagacaaagtgctaagtaccttatatgataaaggcttaagcacagttttaaa 244
Query: 181 tgtt-ggggttaattgctgaaccattctttaatttgggcagaatccttttaagtgttaaa 239
|||| |||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 243 tgttcagggttaattgctgaaccattctttaatttgggcaga--------aagtgtt--a 194
Query: 240 gtctccttaggtggttccctggtgggctaatgaatagaccagcctagttcctatgaggaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gtctccttaggtggttccctggtgggctaatgaatagaccagcctagttcctatgaggaa 134
Query: 300 tttggtttcctaatgaatataattagcataacaaaaggagtggaaaagcaagtttattac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 tttggtttcctaatgaatataattagcataacaaaaggagtggaaaagcaagtttattac 74
Query: 360 tttcaaatcttagacctcaggtgaatattgtctacatttactttatgtcatgtctttgtc 419
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 tttcacatcttagacctcaggtgaatattgtctacatttactttatgtcatgtctttgtc 14
Query: 420 ttctaaaccc 429
||||||||||
Sbjct: 13 ttctaaaccc 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 838
Length adjustment: 9
Effective length of query: 428
Effective length of database: 829
Effective search space: 354812
Effective search space used: 354812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
