BAC Information

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BAC

Clone NameMSMg01-377D17
Chromosome1 (Build37)
Map Location 155,112,333 - 155,280,773
singlet/doubletdoublet
Overlap geneLamc1, EG667795, EG626058, 1700012A16Rik
Upstream gene5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2
Downstream geneDhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377D17.T7 (MSMg01no377_d17.b1)MSMg01-377D17.TJ (MSMg01no377_d17.g1)
ACCAG482362AG482363
length783769
length of high quality
(start - end)		440 (45 - 484)474 (75 - 548)
definitionCHROMAT_FILE: MSMg01no377_d17.b1 PHD_FILE: MSMg01no377_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:20 2005CHROMAT_FILE: MSMg01no377_d17.g1 PHD_FILE: MSMg01no377_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,280,337 - 155,280,773)(155,112,333 - 155,112,806)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCACCTCTTCTGGCTTTATAAAGTACAAAATAAAAACAGGGCAAA
GCTTTTCTAATATCTAATACTTGTGCAATTTGTGACCAACAGAGTTACAC
ATATATTGTGTTAATTAAGAACGGGTAAATTGAACCCATCAGTCTCAAGT
CAATCAATAAATATAAAGTGTTTCTTTGAGCACAGCTCAGGCATGACATG
AGCAGCTGGATAAGGTAATTGTAAGTCTCAGGAGTAAGAAAGCTTCGTTA
CCTTACAACTTCCAGGGCCAGAGCAATGTCTCGGACATCGGCGTCCTGCC
CGTCCACGGGATACACCTCCAGGAGAGGCGCGCTGTATTCCAGCTCGCCC
AGAACCTCGTCCACCAAGTCCCGAGGGATATTTGCAATGTTAGAAGAAAA
GGGCTCAGCCACAGAAACTGTCACTTTGAAACAAGACGACAAGTTCTGGC
GGTGTTTACACGTTACCTAGGGAAAATGTCATACAGTAGGTAACTGCAAA
TTCCCCAAAGCCACCAGTGTCTAGTCACACTGCTGACTCCTCTAAATTCC
TAAGACTTTTTCCTTGTTTCCAATTATTGAATATTTTTTGTAAAAAATTA
TATAACCATATGGTTTTTCTGATTTCCTTTTTTAAAATAATAATTTACCC
GCCCTCTCCTCTTTTTTTATCTCTTCACACTTCTTATATTCCCTTCCCCT
TCTTATATTCCTTTCTTTTCCCCTTTTCCTTTC

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCTGCAGCCTCCTACGTGGTAAAAT
ATTTCTAATCTCCCCGAGTACGGAGAAGCTCTTCCTGTCTCAGAGTTGGA
TGCAAACACTGACTGCCGGGGAACATAAACGTCTCTCTGTTATGTGCAGT
TCAGAGAAATTCCATGAGGACCTTGTGAAACAACTGCCTGTATAGTTTAC
TGATGAATGATAATGGCCATACAGAACTTTCCAGGATTCCAAAATGCCTT
CCAAGGGCTGAATCAGAACAAAAGAAGTTCCTTCTAAAGAACCAAATTAG
GTGCCACGGGGCTCACTATTGAACTTACAGGCTAACTCTCTAGAAATCAG
AAACTGAACTCTCTCTCTCTCTCTCTGTCAAGTCAAGATCAAGAACGTTA
ACACTAAGAAAGCTGTAGAACAGTCAATTAGAGACGGTGTATGTTTAGGC
TACTAACTAGGCCTCTCCAAACAGTTAACACAAACAGTAGACGCAGAAGG
CCACTGTTTGAAAACGTTCTCAGGGTTGTGAGCAGAGAGTTCCAGGACAG
CAGGTCCAGTTGTGGACCAGCTGCCACTGTTGCACCTCAAAAAGATTGTC
CACCTATTTACGTTTCTGTTTCTTCCGCCTCAATCCCATTCAGGTTGGGG
TTTTTGATTTTCTCTTCTACCCCCCGTTTGCCCCCCCCACCCTCATTATT
CCTTGTTGGGTTCGGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_d17.b1 MSMg01no377_d17.b1 CHROMAT_FILE:
MSMg01no377_d17.b1 PHD_FILE: MSMg01no377_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:20 2005
         (440 letters)



>mm_chr1_155280134_155280973
          Length = 840

 Score =  830 bits (429), Expect = 0.0
 Identities = 435/437 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaccacctcttctggctttataaagtacaaaataaaaacagggcaaagcttttc 63
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ggaattcaccaccacatctggctttataaagtacaaaataaaaacagggcaaagcttttc 581

                                                                       
Query: 64  taatatctaatacttgtgcaatttgtgaccaacagagttacacatatattgtgttaatta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 taatatctaatacttgtgcaatttgtgaccaacagagttacacatatattgtgttaatta 521

                                                                       
Query: 124 agaacgggtaaattgaacccatcagtctcaagtcaatcaataaatataaagtgtttcttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 agaacgggtaaattgaacccatcagtctcaagtcaatcaataaatataaagtgtttcttt 461

                                                                       
Query: 184 gagcacagctcaggcatgacatgagcagctggataaggtaattgtaagtctcaggagtaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gagcacagctcaggcatgacatgagcagctggataaggtaattgtaagtctcaggagtaa 401

                                                                       
Query: 244 gaaagcttcgttaccttacaacttccagggccagagcaatgtctcggacatcggcgtcct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gaaagcttcgttaccttacaacttccagggccagagcaatgtctcggacatcggcgtcct 341

                                                                       
Query: 304 gcccgtccacgggatacacctccaggagaggcgcgctgtattccagctcgcccagaacct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gcccgtccacgggatacacctccaggagaggcgcgctgtattccagctcgcccagaacct 281

                                                                       
Query: 364 cgtccaccaagtcccgagggatatttgcaatgttagaagaaaagggctcagccacagaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cgtccaccaagtcccgagggatatttgcaatgttagaagaaaagggctcagccacagaaa 221

                            
Query: 424 ctgtcactttgaaacaa 440
           |||||||||||||||||
Sbjct: 220 ctgtcactttgaaacaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no377_d17.g1 MSMg01no377_d17.g1 CHROMAT_FILE:
MSMg01no377_d17.g1 PHD_FILE: MSMg01no377_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:20 2005
         (474 letters)



>mm_chr1_155112133_155113006
          Length = 874

 Score =  917 bits (474), Expect = 0.0
 Identities = 474/474 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctgcagcctcctacgtggtaaaatatttctaatctccccgagtacggagaagctcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctgcagcctcctacgtggtaaaatatttctaatctccccgagtacggagaagctcttc 260

                                                                       
Query: 61  ctgtctcagagttggatgcaaacactgactgccggggaacataaacgtctctctgttatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtctcagagttggatgcaaacactgactgccggggaacataaacgtctctctgttatg 320

                                                                       
Query: 121 tgcagttcagagaaattccatgaggaccttgtgaaacaactgcctgtatagtttactgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcagttcagagaaattccatgaggaccttgtgaaacaactgcctgtatagtttactgat 380

                                                                       
Query: 181 gaatgataatggccatacagaactttccaggattccaaaatgccttccaagggctgaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatgataatggccatacagaactttccaggattccaaaatgccttccaagggctgaatc 440

                                                                       
Query: 241 agaacaaaagaagttccttctaaagaaccaaattaggtgccacggggctcactattgaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaacaaaagaagttccttctaaagaaccaaattaggtgccacggggctcactattgaac 500

                                                                       
Query: 301 ttacaggctaactctctagaaatcagaaactgaactctctctctctctctctgtcaagtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttacaggctaactctctagaaatcagaaactgaactctctctctctctctctgtcaagtc 560

                                                                       
Query: 361 aagatcaagaacgttaacactaagaaagctgtagaacagtcaattagagacggtgtatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagatcaagaacgttaacactaagaaagctgtagaacagtcaattagagacggtgtatgt 620

                                                                 
Query: 421 ttaggctactaactaggcctctccaaacagttaacacaaacagtagacgcagaa 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaggctactaactaggcctctccaaacagttaacacaaacagtagacgcagaa 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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