BAC Information

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BAC

Clone NameMSMg01-377E07
Chromosome1 (Build37)
Map Location 9,739,250 - 9,739,725
singlet/doubletsinglet
Overlap geneLOC100039536
Upstream geneSntg1, LOC100039474, LOC620444, EG665007, LOC665103, LOC100039464, EG620853, LOC665138, Rrs1, Adhfe1, LOC620542, 3110035E14Rik, Mybl1, Vcpip1
Downstream geneLOC665173, Sgk3, EG620986, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1, Cpa6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377E07.T7 (MSMg01no377_e07.b1)MSMg01-377E07.TJ (MSMg01no377_e07.g1)
ACCAG482390AG482391
length784757
length of high quality
(start - end)
476 (56 - 531)411 (80 - 490)
definitionCHROMAT_FILE: MSMg01no377_e07.b1 PHD_FILE: MSMg01no377_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:23 2005CHROMAT_FILE: MSMg01no377_e07.g1 PHD_FILE: MSMg01no377_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTAAATACACGAGGGTGGCCTCAAATCCACAGAGATCCAC
CTGCCTCTATCTCCTGAGTGATGGGACTAAAGATGTTTGCCACCAACCTG
TCTTCTTTTTTAAGTGTTAAGGAAATTGCTTGTCATCAAATGTTTAAAAA
ATAAGTTTAAAAGAAAGTTAACGTTGTCTGTTAGCAGTTAGAGATCACAA
TTATTAAGGTTTTTCTATGCATATATAGTATACAGTTTTACTTTTTGAGC
CCAGGCAGACCTCAAACTCCCTATAGTAGAGAATTGACCTTGAACTTTCT
GTCTTCTGCCTCCACCTCCCAAATGCCAGGGTCAGAGGTACATACCACTA
CACCTAGGTTATGCAGTGTTAAGGGCTGAACTTGGAGCTTCATGCATGAT
AGGCAGGCATTCTACTAACTGAGATATAATCCCAGCCTGCATAATATATA
GGAGATTTTCACTTCACTCTATTTTTTAGACTATAATATAATTATATGTC
CCTTCCCATTCCTCCTTCCTAACCCTCATATATGCCCCCTCCCTGCTCTC
TTTCAAATTCGGGGGCTCAACTGAAGGATTTTTTCAAACTGAAAGTGTGG
GNGGGGNGNCNNNTAACCCNCNNNNCANNANNCCCACTTTCCCCCCTCCC
CTTTCCCCTTTTCCCTTCTCCCATCTTTATTTTTTCTCTTCCCCCACCCT
TTTTTATTTTCCCCCTCTCCTCCTCTTCCCTTTN
NNNCCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAATGTAGTGAATGATAG
TTACCTGACCCTCTGGAAAGTCTCAGGTAGAGTTCAAATGCATGCCATGC
TTGCTAGCCAATAGATTTAAAGGTCTATATGCTTAGCCAATAAGTTTGAA
CTGTAACCTTACCGATGTAACCTGTGCCCCAAAGAAGTACAAAAACTGTT
TGTAATGGCCATTTGGGGTCACCTTCTAGTAACTAGTCTTGAGGTGTAAG
ACAACGCCTCCCTCGGTCAGTGTTACTTCAAGATGACCCCGAGTGAGACA
CTAAGATGCAGGTTGGTGCAAAAGCAAAAGGTTTATTTTCCGCTCATTAG
AGTCAACCCTCAATCAGTCCTTCTGTCCTATACAGAGTCAACCCTCAATC
AGCCCTTCTGTCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTT
GCTGGGATTTGAACTCANGACCTTCGGAAGAGCAGTCAGTGTTATTAACT
ACTGAGCCATCTCTCCACCCATGTGTTTATGTTTGTTCCTCCTTCTTACA
GGACCAGGACAAAGGGGCTAAAGAAATACCTACTATCATTTGGGGCCCAC
AAAAAAATACAAATTCCTCCGGCTGGTTCGCCACCTTTTTTTTTTTTCAC
GGCAAACTCTTATGCTCCCACAAGAGTTTTTAAACTAAACTTCCCCCATA
AATTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_e07.b1 MSMg01no377_e07.b1 CHROMAT_FILE:
MSMg01no377_e07.b1 PHD_FILE: MSMg01no377_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:23 2005
         (476 letters)



>mm_chr1_9739050_9739925
          Length = 876

 Score =  905 bits (468), Expect = 0.0
 Identities = 474/476 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcactaaatacacgagggtggcctcaaatccacagagatccacctgcctctatctcct 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcactaaatagacgagggtggcctcaaatccacagagatccacctgcctctatctcct 260

                                                                       
Query: 61  gagtgatgggactaaagatgtttgccaccaacctgtcttcttttttaagtgttaaggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtgatgggactaaagatgtttgccaccaacctgtcttcttttttaagtgttaaggaaa 320

                                                                       
Query: 121 ttgcttgtcatcaaatgtttaaaaaataagtttaaaagaaagttaacgttgtctgttagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcttgtcatcaaatgtttaaaaaataagtttaaaagaaagttaacgttgtctgttagc 380

                                                                       
Query: 181 agttagagatcacaattattaaggtttttctatgcatatatagtatacagttttactttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttagagatcacaattattaaggtttttctatgcatatatagtatacagttttactttt 440

                                                                       
Query: 241 tgagcccaggcagacctcaaactccctatagtagagaattgaccttgaactttctgtctt 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagcccaggcagacctcaaactccctatagtagagaattgaccttgaactttctgtctt 500

                                                                       
Query: 301 ctgcctccacctcccaaatgccagggtcagaggtacataccactacacctaggttatgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgcctccacctcccaaatgccagggtcagaggtacataccactacacctaggttatgca 560

                                                                       
Query: 361 gtgttaagggctgaacttggagcttcatgcatgataggcaggcattctactaactgagat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgttaagggctgaacttggagcttcatgcatgataggcaggcattctactaactgagat 620

                                                                   
Query: 421 ataatcccagcctgcataatatataggagattttcacttcactctattttttagac 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataatcccagcctgcataatatataggagattttcacttcactctattttttagac 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)