GTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAAGAGGATCCG
CGGAATTCAAACTTTCAAAGTCTATTGGGACCAAACCTGTTTAAATTACC
ATAAATTCTCAAAAGTTGTTTTATGGAGTTTGTATGTATTCCATGGCACA
AATACACAGCCCTTTTCTCAAATCCACCATGTGCATATATTACCAGTAAC
AAACAAACCAAATTTGAAAGTTAAGATCTAAATTACACAATACTATTATT
TTCTAAACTAGTAGAGATGATAATTTTTACCAGTTTATTTATATATATAT
ATGTTTATATATTTGCATACACACACACACACACACACACATATATGATT
TGTGTGGAGTCTGAAAAGATGGCTCTGTGGTTCAAAACATGCACTGCTCT
TATAAAGCATCTAAGTTTAGTTTCCAGCACCCGCATGAATCTTTCAACAA
CATTTTATAGTTACAGCTCCAGAAGATCTCACATTATCCCCTGGCCTCCA
CAGGTACCTGTACACATGTGCACATTACATAATCCTCATATGTACCTAAT
TTTAAAATACTAAACATTAATCTGATCCCTTAATTGTCATTCCATATAAT
CCGTTTTGACTTTATAATCCTCACAGCTGTGTCAATTCTCGCTATTATTA
TCTTTCCCAAATCATTTTTTCGGCAAAAAGCAACTTTTATCCCCCTTCCC
TCATCTCCTTTCATTGCATTCCTTCATACCCTTCTTTTCCCATTTCCTTT
G

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAATAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGTATATATCCAGAAGATGCCCCAACAGGT
AAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAATGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACACATTCTCAAAGAAACTCACACAATATGTATTCCCTGA
TAAGTGGAAATTAANCCCCAACCCTAGGATACCCCAGAAATTAGAATAAA
ATTTGCTACCCCCATTGAACCCCCCGTAAAATGATAAACTGTAGTGGGCA
ACTCTAC

Query= MSMg01no377_l09.b1 MSMg01no377_l09.b1 CHROMAT_FILE:
MSMg01no377_l09.b1 PHD_FILE: MSMg01no377_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:59 2005
         (399 letters)



>mm_chr1_19346922_19347720
          Length = 799

 Score =  698 bits (361), Expect = 0.0
 Identities = 389/401 (97%), Gaps = 6/401 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtctattgggaccaaacctgtttaaattaccataaattctcaaaagttgttttatggag 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 agtctattgggaccaaacctgtttaaattaccatgaattctcaaaagttgttttatggag 260

                                                                       
Query: 61  tttgtatgtattccatggcacaaatacacagcccttttctcaaatccaccatgtgcatat 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 tttgtatgtattccatggcacaaatacacaccccttttctcaaatccaccatgtgcatat 320

                                                                       
Query: 121 attaccagtaacaaacaaaccaaatttgaaagttaagatctaaattacacaatactatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attaccagtaacaaacaaaccaaatttgaaagttaagatctaaattacacaatactatta 380

                                                                       
Query: 181 ttttctaaactagtagagatgataatttttaccagtttatttatatatatatat--gttt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 381 ttttctaaactagtagagatgataatttttaccagtttatttatatatatatatatgttt 440

                                                                       
Query: 239 atatatttgcatacacacacacacacacacacacatatatgatttgtgtggagtctgaaa 298
           |||||| ||||||||||||||||||||||||||    |||||||||||||||||||||||
Sbjct: 441 atatatgtgcatacacacacacacacacacaca----tatgatttgtgtggagtctgaaa 496

                                                                       
Query: 299 agatggctctgtggttcaaaacatgcactgctcttataaagcatctaagtttagtttcca 358
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 497 agatggctctgtggttcaaaacatgcactgctcttagaaatcatctaagtttagtttcca 556

                                                    
Query: 359 gcacccgcatgaatctttcaacaacattttatagttacagc 399
           ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 557 gcacccgcatggatctttcaacaacattttatagttacagc 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)