NCCCCTTTATAATTTGCGGCCGCTAAAAGAATCACTTTTCAAAGAGGATC
CGCGGAATTCACAAATTACTCAAAGGCAGCTCCAGCTGTCCATTAGTCAA
AACACAGGAAATCATTAAAATGTTTTGGTAGCACATACTGAAATACCAAA
GTCAGTGTTTCCAGCAGTAACCACTGAGTGAACGCACAGACAGGAAACTT
GGAGGTACTGGGAACAGCATGAGTTCCACGTACATCCCTATGGGAAGAGA
AGAACATTGCTGGTTCCATGGCATGTTCAACATGTGGCATTAGGACTGGG
CATGTCCCTCCAAGGTAGATTTTTTTTCTAGCACACACGAGGCCCGAGCA
CCACACAAATAAGTAGAATTGTATAGGTCTCAAAACCAGGTTTTAAACAG
TAAGAAAGAGCAGCATGGGCCTTGAGTGCTTTGAAGAACTGGGGCTCACT
TGTTTTCTTTTTTTTGGGGGGGGCGGTTACGAGACAGGGTTTCTCTGTTT
AGCCCTGGCTGCCCTGGAACTCACTTTGTAGACCAGGCTGGTCTCTAACT
CCTAAATCCACCTTGCCCTGTCTCCCTAAGGCTGTGATTAAAGGCGTGTG
CCTTCATCCATTTTCCTGTCTGGTTACTGTTTTTTCTTAAAAAACTTTTC
TGTTTTTTTTTCTGCTTTTTCCGGCCTTTCCTTCCCGTTTTCCGTTCCAC
CTAATTATTTTTTCTTTTTTTCCCCCCTTTTTTTTTTTTTCCCTCCCCAC
CATATCTTTTTN

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTGGACGTTGGACATATTTTGAA
ATTAGACTCCACAGGATTTTACTGATGATCTAGTGTACAGGGTGCGAGAG
ACTCGGTGTGTGAGCTGTGAGAAATATGTGTTAAAGTTCTGGTGAATTAA
CTTTAGAGGCAGCTGTGGAGAAGCCTTAAAGTCCTCTTTAGGCCTGGTTA
AGTTGATAGGAATTGTAAAACTCCTGGCCACTAAGAACAGAAAGAAATCA
GGATGACCCCTCTGCCCAGTTTGTTCTTGCCTGAGGCGGCCAAGCTGAAG
AGATAGTGGCCTTGCATACGAGAAACCACGTGGTAAGAAGACTTGAAGGT
TAAGGTGTCAGGACAGACTCCCTGGAGTCGTAGGCAGGTTCAGGGCTTAC
TTAGTGTGTGGGACCGGCCTTGGCTTCTCCCATTTCTCTCCCCTGCTTCC
CCTTCCGTTCCCTTCTCTCAAACCAATTGCTAGGTTACCAGAAGCTTTGA
CTCTCCTAGGTTCCCATACTTTTCGTGCAGGGTATTCCCGAACCGTTTAA
CTCCCCCCTTCCCTCCCTCTTTCTTTCTTTTCTTTCTCCTTCCCTCCTTA
CTTTCCTTATTTTCCTTCATACTATTTACCCCCCTTGTTCCCCTACATCC
TCCCTATACCATTTTTTTCCCCCCCTTTTTTTTTACCATCCATTATTGTT
TTCTACATCTACTTCATCCTCCTCTATACATN

Query= MSMg01no377_m11.b1 MSMg01no377_m11.b1 CHROMAT_FILE:
MSMg01no377_m11.b1 PHD_FILE: MSMg01no377_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:05 2005
         (244 letters)



>mm_chr1_153572291_153572934
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcagctccagctgtccattagtcaaaacacaggaaatcattaaaatgttttggtagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggcagctccagctgtccattagtcaaaacacaggaaatcattaaaatgttttggtagca 385

                                                                       
Query: 61  catactgaaataccaaagtcagtgtttccagcagtaaccactgagtgaacgcacagacag 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caaactgaaataccaaagtcagtgtttccagcagtaaccactgagtgaacgcacagacag 325

                                                                       
Query: 121 gaaacttggaggtactgggaacagcatgagttccacgtacatccctatgggaagagaaga 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 324 gaaacttggaggtactgggaacagcatgagttccatgtacatccctatgggaagagaaga 265

                                                                       
Query: 181 acattgctggttccatggcatgttcaacatgtggcattaggactgggcatgtccctccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acattgctggttccatggcatgttcaacatgtggcattaggactgggcatgtccctccaa 205

               
Query: 241 ggta 244
           ||||
Sbjct: 204 ggta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no377_m11.g1 MSMg01no377_m11.g1 CHROMAT_FILE:
MSMg01no377_m11.g1 PHD_FILE: MSMg01no377_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:05 2005
         (387 letters)



>mm_chr1_153417474_153418260
          Length = 787

 Score =  721 bits (373), Expect = 0.0
 Identities = 382/385 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctggacgttggacatattttgaaattagactccacaggattttactgatgatctagtgt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 cctggacgttggacatattttgaaattagactcgacaggattttactgatgatctagtgt 260

                                                                       
Query: 61  acagggtgcgagagactcggtgtgtgagctgtgagaaatatgtgttaaagttctggtgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagggtgcgagagactcggtgtgtgagctgtgagaaatatgtgttaaagttctggtgaa 320

                                                                       
Query: 121 ttaactttagaggcagctgtggagaagccttaaagtcctctttaggcctggttaagttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaactttagaggcagctgtggagaagccttaaagtcctctttaggcctggttaagttga 380

                                                                       
Query: 181 taggaattgtaaaactcctggccactaagaacagaaagaaatcaggatgacccctctgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggaattgtaaaactcctggccactaagaacagaaagaaatcaggatgacccctctgcc 440

                                                                       
Query: 241 cagtttgttcttgcctgaggcggccaagctgaagagatagtggccttgcatacgagaaac 300
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagggtgttcttgcctgaggcggccaagctgaagagatagtggccttgcatacgagaaac 500

                                                                       
Query: 301 cacgtggtaagaagacttgaaggttaaggtgtcaggacagactccctggagtcgtaggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacgtggtaagaagacttgaaggttaaggtgtcaggacagactccctggagtcgtaggca 560

                                    
Query: 361 ggttcagggcttacttagtgtgtgg 385
           |||||||||||||||||||||||||
Sbjct: 561 ggttcagggcttacttagtgtgtgg 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)