Query= MSMg01no377_n13.b1 MSMg01no377_n13.b1 CHROMAT_FILE:
MSMg01no377_n13.b1 PHD_FILE: MSMg01no377_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:10 2005
(469 letters)
>mm_chr1_195018195_195019063
Length = 869
Score = 509 bits (263), Expect = e-148
Identities = 281/287 (97%)
Strand = Plus / Plus
Query: 5 gaattctttcattcactttaactaaaagagtgaatcacaagaggctgaattcagaagcaa 64
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttcaaacactttaactaaaagagtgaatcacaagaggctgaattcagaagcaa 264
Query: 65 atagagtttagctgtctattttttcagctagatcttgtaaatgtatattgtatatgccgc 124
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 265 atagagtttagctgtctattttttcagctagatattgtaaatgtatattgtatatgccgc 324
Query: 125 ttctctctttttatccttttgaaaacaaaattcttcattaaaatacataaattaacgaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctctctttttatccttttgaaaacaaaattcttcattaaaatacataaattaacgaat 384
Query: 185 gatgcttgactagtgtcatttcaaaattaatgtttctaaatttctgttttaacttttaac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gatgcttgactagtgtcatttcaaaattaatgtttctaaatttctgttttaacttttaac 444
Query: 245 aaggtgagttctgatatggtacacatcctttgttctttggaattttt 291
|||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 445 aaggtgagttctgatatggtacacatccaaagttctttggaattttt 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_n13.g1 MSMg01no377_n13.g1 CHROMAT_FILE:
MSMg01no377_n13.g1 PHD_FILE: MSMg01no377_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:11 2005
(408 letters)
>mm_chr1_195201588_195202395
Length = 808
Score = 661 bits (342), Expect = 0.0
Identities = 373/396 (94%), Gaps = 22/396 (5%)
Strand = Plus / Minus
Query: 35 acacacacacacacagccccttctacatacataat------cacacacacacacacacac 88
||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 803 acacacacacacacagccccttctacatacataatcacacacacacacacacacacacac 744
Query: 89 acacacaaacacacaaacacacac--acacacacacactgccccttctacatacataat- 145
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 743 acacacaaacacacacacacacacatacacacacacactgccccttctacatacataatc 684
Query: 146 -------------cacacacacacacaatgccccttctacatacacaatcacacacacac 192
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 acacacacacacacacacacacacacaatgccccttctacatacacaatcacacacacac 624
Query: 193 atacacacacaaacaatggcccttctacacacaaacatacacaccgtctaccaaggctag 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atacacacacaaacaatggcccttctacacacaaacatacacaccgtctaccaaggctag 564
Query: 253 gatcattgtactcagaccacaaagacagtagatccctccagagctgggccacatagcaga 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gatcattgtactcagaccacaaagacagtagatccctccagagctgggccacatagcaga 504
Query: 313 taccaagctgaggatggagggatgccctccaccttgtagatgctccagtgtagggccatc 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 taccaagctgaggatggagggatgccctccaccttgtagatgctccagtgtagggccatc 444
Query: 373 aacttacagagtgacatgaatgctttatgaatcctg 408
||||||||||||||||||||||||||||||||||||
Sbjct: 443 aacttacagagtgacatgaatgctttatgaatcctg 408
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 118
Number of extensions: 7
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space: 318801
Effective search space used: 318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
