BAC Information

Click to search

BAC

Clone NameMSMg01-377N20
Chromosome1 (Build37)
Map Location 72,353,512 - 72,353,989
singlet/doubletsinglet
Overlap genenone
Upstream geneAbca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169
Downstream geneXrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377N20.T7 (MSMg01no377_n20.b1)MSMg01-377N20.TJ (MSMg01no377_n20.g1)
ACCAG482846AG482847
length787854
length of high quality
(start - end)		482 (45 - 526)193 (76 - 268)
definitionCHROMAT_FILE: MSMg01no377_n20.b1 PHD_FILE: MSMg01no377_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:12 2005CHROMAT_FILE: MSMg01no377_n20.g1 PHD_FILE: MSMg01no377_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCCCTGCCTCCTTAGGCAAGGCTTTGTTCTCTGAGCCGCTAAAA
GCCAGTCAGTACTGGGCTGGAGAAATGGCTCTGCCGTCTAAGACATTTGT
CATCAAGCCTGACGAGCCCATTCAAGCTCCAGGCACCCATATTGTGGAGA
AAAAGAACCAATTCCACAAGTTGCCCTCTGATCTCCACGTGTCCCACACA
TCACAATAAGTAAATAAATAAATTTAAAATAACAAGTTTAATAGTAAAAA
AGTAAATAGGGGGTTAAAGGGAAAGGGTCCCAGGTTAGGAATGTGTACTG
TTTTCGCAAGGGTATTTCAAAGCCCAGCACCTACATCAGCCTTCCGCGGA
TCTGACGCCCTCTTCTGGCCTCCACTCAATGCACATACCCACATGCAGCC
GCGTGCATACATGATTTTTAAAACTAAAAAAAAAATAATGATTGCTATTA
CTCAATTGATAATAATCCCTTTCGCTAGCAATTTGTATTGGCACTCTGGA
GTTAATAGTCCCCTGTGTAAGATGAATCCTCGAAGCCACTTAACTCCTCT
TAAGGGCCTCCTTAAAATGATACCTAAAAAAAAAAAACTTGAATCCCGAT
GACCTTATATTTTCGCCCCAAAAATAATAAGGTGAGTTTCCCCCCCCTAA
CAAAAAAAAAAGGGCCTCCCAAACTCCCGTAATGGGCGCTTTTTTCCTCC
TTTCTGTTGCCGGCCTGAATAAAATTACCGCCTTACT

GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACGTCCCCAAAACCCATGCAAAAAG
CTTGGTATTAAACACATGTCTCTATGTAGCAGAGGATGGCCTAGTCAGCC
ATCAATGGGAGGAGAGGTCCTTGGTCTTGCAAAGATCATATGCCCCAGTA
CAGGGGAATGCCAGGGACAGGAAGCAGGAGTGGGTGGGTTGGGGAGCAAA
GGGGGGGGGGAATAATAGTTTTTTTNTTAATTTTTTGTATTGAAATATAA
AATTTATATATAATTTATTTTTTTTTTTTATAATTTAATTTTTTTTATTT
TTTATTGAGTTCCCTCGTTTATTATTTCCCGCCTGTCCCTCTTCCCCCTT
TTTTTTTTTGTTCTTTCTTCCTCCACTTGGCCACACCCATATATCCCCTT
CTCCCTTTGCCCGCCCTTCTCTTCTCGCTTCTCCTTTTTTTTTATACACC
TTTCCTTTCTCCTCTTTTATTTCTGTCCTCAGCACTATCAATCCCCTATC
TTTTCCCTATGTTTTTATTTATTCGTCCCCTGCTATTATCTTCTTTTTTT
CTATTACCCTATAATTCCCCCGCTTCCCCCTACTTCTCTTTTTTCTCCAT
TATTTCTTCTATCTTCTATCTTGCACCACTAATTCGTTTATTCTGACCAG
CCAATTGTTCACCCGCCTTTTTCCTTATTTCATCTACCCACCCTATTTTA
TTTCTTATACTCTTTTTTATAAATTTCTTACCTTCATTTTTCCCTCTCCC
CCCCCCTTCCTTTTTTTTTCTCCCTATTACTTCTTTAGCCTTCTTATCTT
TTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_n20.b1 MSMg01no377_n20.b1 CHROMAT_FILE:
MSMg01no377_n20.b1 PHD_FILE: MSMg01no377_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:12 2005
         (482 letters)



>mm_chr1_72353210_72354091
          Length = 882

 Score =  917 bits (474), Expect = 0.0
 Identities = 477/478 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctccctgcctccttaggcaaggctttgttctctgagccgctaaaagccagtca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gaattctctccctgcctccttaggcaaggctttgttctctgagccgctaaaagccagtca 721

                                                                       
Query: 65  gtactgggctggagaaatggctctgccgtctaagacatttgtcatcaagcctgacgagcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gtactgggctggagaaatggctctgccgtctaagacatttgtcatcaagcctgacgagcc 661

                                                                       
Query: 125 cattcaagctccaggcacccatattgtggagaaaaagaaccaattccacaagttgccctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 cattcaagctccaggcacccatattgtggagaaaaagaaccaattccacaagttgccctc 601

                                                                       
Query: 185 tgatctccacgtgtcccacacatcacaataagtaaataaataaatttaaaataacaagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tgatctccacgtgtcccacacatcacaataagtaaataaataaatttaaaataacaagtt 541

                                                                       
Query: 245 taatagtaaaaaagtaaatagggggttaaagggaaagggtcccaggttaggaatgtgtac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 taatagtaaaaaagtaaatagggggttaaagggaaagggtcccaggttaggaatgtgtac 481

                                                                       
Query: 305 tgttttcgcaagggtatttcaaagcccagcacctacatcagccttccgcggatctgacgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgttttcgcaagggtatttcaaagcccagcacctacatcagccttccgcggatctgacgc 421

                                                                       
Query: 365 cctcttctggcctccactcaatgcacatacccacatgcagccgcgtgcatacatgatttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cctcttctggcctccactcaatgcacatacccacatgcagccgcgtgcatacatgatttt 361

                                                                     
Query: 425 taaaactaaaaaaaaaataatgattgctattactcaattgataataatccctttcgct 482
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 360 taaaactaaaaaaaaaataataattgctattactcaattgataataatccctttcgct 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |