NCCAAAAACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCACCAGTACTCTAGTGTGATTCCCTCTGTAGAAAGAC
TTCTGTGTCTTTTAAAATTTTGTGGTTTATCACAAATTGCCAAAAATCTA
GCCCGCAGAGCTATTCATCAGCTCAAAATGATTTCAAGTCGCCCCCCGTC
CCCCCGCCCACCCGAACACCCCTCGTTAAAGCTTTGAATGTTCTGTTGGA
CTCCTTATGTTAATACTGTATGTGTTACCGGGATTTCTGCTCATAGGAAA
CAAAGCACATTCATAAAATCTAGATTTCACACAAAGATCGCTTTTTCTTC
AATATTGCATTTAAATCGACGCATTCTTTTCCCTCTATATTCCCGAAAAT
CAGATAGGGAGACTGGATGGATCCGTTACTGAAGGGAATTTAACTGAGCC
TTAGTAAAAATTAATTTAGATGTGTGTGGTTTTTGTAAAACATGCAATCT
GTTGTGTTTGATCTTGTCCTTGGAAGCAGGAGCAGAAGTAGTTCGTGCAC
AAACACACTAAATGAATATGTGTTTATGCAAGCTAATAAATGACCCTTTT
TTATTCCGTAGTCTACTGAACCCTCCTCTGGCTCCACGTTAGTCCATGGA
TAATTGGTTGCAGTTCCCTTTCACTATTCAGTTCCAAGCTTGTTTTTTTT
AACTCCTAAACCTTTTATTTTTGCCTGGATTTTTCTCAAAAAN

NNNNTTTACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCAATGGGAGGGGAA
CCCCTTGGTCCTGTGGAGGCTCAATTCCCCAGCATACGGGAATGTTAGGG
TGATGAGATGAGAAGAGGTGGGTAGGTGCCCCCCCCCCTTCCTTTTTCTC
CTTCCCTTCTCTTTTTTTTTTTCCCTTTTTCCCCCCCTCTTTCCTTTTTT
TCTTTTCCTCCCCTTTTCTTTTTTCCTCCTCTTTTCCCTTTCTCCTTCTC
TCCTTCCCCCCCCCCCCTTTTTCCCCCCTTTCTCTCCCTTTTTTTTTCTC
CCCCCCCCCCCCCCCCTTCTTTTTCTTTCCCCCTTCTCCCTCTTTCCCCC
TCCTTCTTCCCCTTTCTCTTTTTTTTTTTTCTCCTTCCTCCCCCCTCTTC
CCCCCCCCCTCTTTCTTTCCCCCTTCCCTTTCCTCTTCTCCCTCCCTTTT
TTTTCTCCCCCCCTCTTTTCTCCCTCTCTTTCCCCCCTTTCTTTTTTTTC
CCTCCCTTCCTCCTTTCCCCCCTTTTCTCCTTCTCTTTCCCCTCCCTTTT
TTTTTCCCCCCCTCCCTCTCCTCTTTTTTTTTTTTTCCCCCCTTCCCCCT
CTTTTCTTTCCTCTTTTTCTTCTCCTTTCGCCCTTTCTCTCCCCCTTTCT
CTCCCTTTATTCTTTTTTCCCCCCGCTTTTTTTCCCCTCCTCCCTCCTCT
TCTTTTTCTCTCCCCCCCTTTCTTTTTTCCCTCCCTTTCTCTCTTTTTCC
CCCCCCCTCTTTCTTCCTCCTTTTTTTTCN

Query= MSMg01no377_o07.b1 MSMg01no377_o07.b1 CHROMAT_FILE:
MSMg01no377_o07.b1 PHD_FILE: MSMg01no377_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:14 2005
         (489 letters)



>mm_chr1_81533318_81534209
          Length = 892

 Score =  928 bits (480), Expect = 0.0
 Identities = 485/488 (99%), Gaps = 3/488 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccagtactctagtgtgattccctctgtagaaagacttctgtgtcttttaaaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccagtactctagtgtgattccctctgtagaaagacttctgtgtcttttaaaat 264

                                                                       
Query: 65  tttgtggtttatcacaaattgccaaaaatctagcccgcagagctattcatcagctcaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgtggtttatcacaaattgccaaaaatctagcccgcagagctattcatcagctcaaaa 324

                                                                       
Query: 125 tgatttcaagtcgcccccc---gtccccccgcccacccgaacacccctcgttaaagcttt 181
           |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgatttcaagtcgcccccccccgtccccccgcccacccgaacacccctcgttaaagcttt 384

                                                                       
Query: 182 gaatgttctgttggactccttatgttaatactgtatgtgttaccgggatttctgctcata 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaatgttctgttggactccttatgttaatactgtatgtgttaccgggatttctgctcata 444

                                                                       
Query: 242 ggaaacaaagcacattcataaaatctagatttcacacaaagatcgctttttcttcaatat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggaaacaaagcacattcataaaatctagatttcacacaaagatcgctttttcttcaatat 504

                                                                       
Query: 302 tgcatttaaatcgacgcattcttttccctctatattcccgaaaatcagatagggagactg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgcatttaaatcgacgcattcttttccctctatattcccgaaaatcagatagggagactg 564

                                                                       
Query: 362 gatggatccgttactgaagggaatttaactgagccttagtaaaaattaatttagatgtgt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gatggatccgttactgaagggaatttaactgagccttagtaaaaattaatttagatgtgt 624

                                                                       
Query: 422 gtggtttttgtaaaacatgcaatctgttgtgtttgatcttgtccttggaagcaggagcag 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtggtttttgtaaaacatgcaatctgttgtgtttgatcttgtccttggaagcaggagcag 684

                   
Query: 482 aagtagtt 489
           ||||||||
Sbjct: 685 aagtagtt 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 892
Length adjustment: 10
Effective length of query: 479
Effective length of database: 882
Effective search space:   422478
Effective search space used:   422478
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)