BAC Information

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BAC

Clone NameMSMg01-377P16
Chromosome1 (Build37)
Map Location 66,113,231 - 66,113,633
singlet/doubletsinglet
Overlap genenone
Upstream geneCrygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786
Downstream geneMtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377P16.T7 (MSMg01no377_p16.b1)MSMg01-377P16.TJ (MSMg01no377_p16.g1)
ACCAG482934AG482935
length770767
length of high quality
(start - end)		437 (45 - 481)403 (76 - 478)
definitionCHROMAT_FILE: MSMg01no377_p16.b1 PHD_FILE: MSMg01no377_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:21 2005CHROMAT_FILE: MSMg01no377_p16.g1 PHD_FILE: MSMg01no377_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCTATATGCTTACCCACAGACAATGAAAGACCCACAATGTGAAAA
CTCCCCCACATTCTGACTCAGGAGAGGCGACACCCCAAATCACTCATGAG
AAACGGTCTTGCTGCAAACTGCAAGAGGACTTTTATTTCAAGAGCGCTCT
CGAGTCCACAGTCATATACCACACAGGTGTAGAGGACCATGGCACCCCAA
GTAACTAGGTAAGGGGGTATTTAAAAGAAGAAACCACAACTCAAGGAGGT
GGGGAGGGCGTTGTTGGAAAATACCAAAAATGCCTGTTAAGAGTCACGAG
GAAGTGGAAAGTCAAGACAGTTTTCTAACAATAACACCTGTGCATAGCAG
GTTCCAGCAATGGTCAGGGTGGGTCAGGGTGGGTCAGGGTGGGTCAGGGT
GACTTTCTTTGAATGAACACTCCCTGAACCCAGGAATCGAAGCAGGTGGG
TGGAGGAATGTTGCTATCCGTTTTATCGACAGTTTTCCTTTGGAACCCCA
AGTCCTTAAGGTCCCTTTCCCATGCCCTGGTCTTACAGACGAGCAATCCG
GCATAATGACTTACCTTTATTCATCAATTATAACCATTCCTTTCCTCTTT
GCCCTTTTTTCCCCTTTTTTCCCAATATAACCTTTTACCCCTCCCATTTT
CTGTCCCTTTTTTTGGCCCAATAAGCCCTCATATCTCATTTCTTTTCCCC
CTTTCTTTATTTCCCTTATC

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGCTGTTGAAGTTAGATAACTGAG
TTCCCACGTGTGGATGACTCCATCAATAATTGCTCCAAGGTTCCCTGTTT
TATTTTATTTTATTATTATTCAGAGTAGAACCAGAGACTCCGCATCTACT
TGGAATATAATTGTATTGGTTAGCGAGTGGAAAGATGTCTGAATGGAATC
TAAGGATCTCCTAAGAAGGAAAGCATGAATAATGTATATTAGGCTGGCAG
CCATCAATTGAATAAATGCAAATGCCTAAAGATAATACATACAAACCTCA
GCTTTTAGAAAAATTTGAACACAGTAAACTAAATAGTTCTGGTGAAGAAA
CAATCAGGCAGAATTGAAAGCTACCTTCTAAGAGAAACATTTTTCTTTTT
TTTTAAAGACTGTAAGAGAAACATTTTGTCCTGAGTTTGACACTGTCTAT
CTCTCCCATTGGGTTTTATTTCTCTCCTCCGGCTATTTTTTATCCCTGGC
TAAGGGATGGATTCTCCACCCCCTCTGGTTGGGAAGGGAATTCACCTCAT
AAACTTTTCTATTTTCCTTTGAAATTTCTACTGGTGCAAATTTTTGAGGC
GTTTACACATATAATTTTCTCCTTGTGTTTTTTTTTCATGTTTGGTTTTT
ATTTTATGTTGTACCCCTTCCCCACCCGCCTTGTGTTTCCTTTTTATCTT
TTCCCCTTTTCTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_p16.g1 MSMg01no377_p16.g1 CHROMAT_FILE:
MSMg01no377_p16.g1 PHD_FILE: MSMg01no377_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:21 2005
         (403 letters)



>mm_chr1_66112936_66113738
          Length = 803

 Score =  779 bits (403), Expect = 0.0
 Identities = 403/403 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgctgttgaagttagataactgagttcccacgtgtggatgactccatcaataattgctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ctgctgttgaagttagataactgagttcccacgtgtggatgactccatcaataattgctc 639

                                                                       
Query: 61  caaggttccctgttttattttattttattattattcagagtagaaccagagactccgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 caaggttccctgttttattttattttattattattcagagtagaaccagagactccgcat 579

                                                                       
Query: 121 ctacttggaatataattgtattggttagcgagtggaaagatgtctgaatggaatctaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ctacttggaatataattgtattggttagcgagtggaaagatgtctgaatggaatctaagg 519

                                                                       
Query: 181 atctcctaagaaggaaagcatgaataatgtatattaggctggcagccatcaattgaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 atctcctaagaaggaaagcatgaataatgtatattaggctggcagccatcaattgaataa 459

                                                                       
Query: 241 atgcaaatgcctaaagataatacatacaaacctcagcttttagaaaaatttgaacacagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 atgcaaatgcctaaagataatacatacaaacctcagcttttagaaaaatttgaacacagt 399

                                                                       
Query: 301 aaactaaatagttctggtgaagaaacaatcaggcagaattgaaagctaccttctaagaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aaactaaatagttctggtgaagaaacaatcaggcagaattgaaagctaccttctaagaga 339

                                                      
Query: 361 aacatttttctttttttttaaagactgtaagagaaacattttg 403
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aacatttttctttttttttaaagactgtaagagaaacattttg 296


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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