BAC Information

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BAC

Clone NameMSMg01-377P22
Chromosome1 (Build37)
Map Location 41,776,548 - 41,776,959
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
Downstream geneLOC383634, LOC666582, 2610017I09Rik, Pou3f3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377P22.T7 (MSMg01no377_p22.b1)MSMg01-377P22.TJ (MSMg01no377_p22.g1)
ACCAG482946AG482947
length801781
length of high quality
(start - end)		418 (44 - 461)366 (76 - 441)
definitionCHROMAT_FILE: MSMg01no377_p22.b1 PHD_FILE: MSMg01no377_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:22 2005CHROMAT_FILE: MSMg01no377_p22.g1 PHD_FILE: MSMg01no377_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGATCCTAGAGTCATAAAGGTGAAAGTAGAGAACACAAATTGTCCCC
CAAGCTACTTGTGTTTCCAAAGAGAGACATGCAAGCATGTATAACCACAC
ATGAGTAAGACAGTTTTTAAACTCCTCTCAAAGCAGCTCTATCTCAGACT
CCAATTGTTCTTCTAAAGCCAAATGATTTCCCAGTGCAAATCTTTGGTCA
TTGCTGCCCACTTCTCCTACCCATAAAGAAAATGATGATGCAAAGTCAGG
AATCAGATCCTTTGTCTCTGTAAGGATTTTTTAGCTTTCTGCCATTTCCT
GGTATTTTATGCATGATGGTATTGCCTTTTGGTTGCTACGAAGCCAATGT
ATTCCTTTTCATAGCTGTGCGTTTCCCAAAGAGAATATGTGCAAGTCTGC
TCCTTGATGCAGACATGGTGAAGTCTGCGAATGAACCCATACATTACTAG
GCCTCAGTGCCCTTCAGAAGAGAAGCAGGTGGGGTGTAACAAATGAGGTT
CTAAAAATTTGAATATGCCTGGCCCTAAGAGAACTTTGGAGAGAAAAATT
CCTAAAATGCCCCCGGAAATAAAAACCTCCATTGGCAAAAAACTTCCCCC
TTTTATAATCCTCGGCCCCGGGGAAAAACTTTTCTTTACCCTTTTTTCAC
CAATTTTTCCCCTCCCCACTTGTGTCAAAAATTTGTTTAAAAAAAAAACC
CCTCTCTACACACAAAATATTTCTCTGGGAATTACATTTTTCTCCATTTA
A

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATAGCTAAACATGATAAA
AGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGC
TGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCT
CCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACA
ACAAAAGGAGATCAAGGGGATACAAATTGGAAAGGAGGAAGTCAAAATAT
CACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTAC
ACCAGAGAACTCCTAAACCTGATAAATAGCTTCGGTGAAGTAGCTGGATA
TAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAAC
AGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAAT
AATATAAAATATCTCGGAGTGACTCTAACTAAGGAAGTGGAAGATCTGTT
TGAAAAAAACTTCCAATCCCGGAGGAAAAAATTAAAAAAATCCCCAAAAA
AGGAAGAACCCCCTGGCCCGGATTGGGGGGACAACTTGGAAAAAGGGTTT
TTTGGCAAAAAAATTACAAAAAAGGGGTCCCCCCAAATCCCCATTATTTT
TTAAAAATTGAGGAGAATTGGTAATTTTTGGTCATCCAACCCCCAGATTG
TATTTCTCCCTTTTATAACCCTCTGTGATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_p22.b1 MSMg01no377_p22.b1 CHROMAT_FILE:
MSMg01no377_p22.b1 PHD_FILE: MSMg01no377_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:22 2005
         (418 letters)



>mm_chr1_41776344_41777159
          Length = 816

 Score =  750 bits (388), Expect = 0.0
 Identities = 407/414 (98%), Gaps = 2/414 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagatcctagagtcataaaggtgaaagtagagaacacaaattgtcccccaagcta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gaattcagatcctagagtcataaaggtgaaagtagagaacacaaattgtcccccaagcta 557

                                                                       
Query: 65  cttgtgtttccaaagagagacatgcaagcatgtataaccacacatgagtaagacagtttt 124
           ||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 556 cttgtgtttccaaggagagacatgcaagcatgtatggccacacatgagtaagacagtttt 497

                                                                       
Query: 125 taaactcctctcaaagcagctctatctcagactccaattgttcttctaaagccaaatgat 184
           |||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 496 taaactcctcgcaaagcag--ctatctcagactccaattgttcttctaaagccaaatgat 439

                                                                       
Query: 185 ttcccagtgcaaatctttggtcattgctgcccacttctcctacccataaagaaaatgatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttcccagtgcaaatctttggtcattgctgcccacttctcctacccataaagaaaatgatg 379

                                                                       
Query: 245 atgcaaagtcaggaatcagatcctttgtctctgtaaggattttttagctttctgccattt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atgcaaagtcaggaatcagatcctttgtctctgtaaggattttttagctttctgccattt 319

                                                                       
Query: 305 cctggtattttatgcatgatggtattgccttttggttgctacgaagccaatgtattcctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cctggtattttatgcatgatggtattgccttttggttgctacgaagccaatgtattcctt 259

                                                                 
Query: 365 ttcatagctgtgcgtttcccaaagagaatatgtgcaagtctgctccttgatgca 418
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 258 ttcatagctgtgcgtttcccaaagaggatatgtgcaagtctgctccttgatgca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 816
Length adjustment: 9
Effective length of query: 409
Effective length of database: 807
Effective search space:   330063
Effective search space used:   330063
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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