Query= MSMg01no378_c03.b1 MSMg01no378_c03.b1 CHROMAT_FILE:
MSMg01no378_c03.b1 PHD_FILE: MSMg01no378_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:33 2005
(530 letters)
>mm_chr1_160332103_160333031
Length = 929
Score = 951 bits (492), Expect = 0.0
Identities = 514/526 (97%), Gaps = 9/526 (1%)
Strand = Plus / Plus
Query: 5 gaattctgcttcctgtctgaggttagctcactcgatcctacgacctcccaaaggcttgga 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcttcctgcctgaggttagctcactcgatcctacgacctcccaaaggcttgga 264
Query: 65 cctgccaattctttgctgtgcccgtggccaagatgtaatcagttcacaaagccagggtgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctgccaattctttgctgtgcccgtggccaagatgtaatcagttcacaaagccagggtgg 324
Query: 125 gggaagatgcagcgtgaagtctcagctgcagcctgtagaggatgtcttctcttaagaacc 184
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gg-aagatgcagggtgaagtctcagctgcagcctgtagaggatgtcttctcttaagaacc 383
Query: 185 gaaatataccagcccaaaggaggaggatgcctgtgtgcctctgaggatcactaggactag 244
|||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaaata--------caaaggaggaggatgcctgtgtgcctctgaggatcactaggactag 435
Query: 245 atcgggaggctggggtagccaaaatgttttattatccatctttgggtccttcagttaagc 304
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 atggggaggctggggtagccaaaatgttttattatccatctttgggtccttcagttaagc 495
Query: 305 ttgtgtgctttggagacttggttgcctctccactctgtacaaagaggaaataaaacatac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttgtgtgctttggagacttggttgcctctccactctgtacaaagaggaaataaaacatac 555
Query: 365 ctacattgtcatctccataggctctgatgaaggtcacatttttttttctttaagaaaata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctacattgtcatctccataggctctgatgaaggtcacatttttttttctttaagaaaata 615
Query: 425 aattataaaagatgctaggcagttcttaggctttaattgtcatcagcgagagaaaaatat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aattataaaagatgctaggcagttcttaggctttaattgtcatcagcgagagaaaaatat 675
Query: 485 ttcttagttttgttttccattacagtgataaaatgccctgataaaa 530
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttcttagttttgttttccattacagtgataaaatgccctgataaaa 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 929
Length adjustment: 10
Effective length of query: 520
Effective length of database: 919
Effective search space: 477880
Effective search space used: 477880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_c03.g1 MSMg01no378_c03.g1 CHROMAT_FILE:
MSMg01no378_c03.g1 PHD_FILE: MSMg01no378_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:33 2005
(470 letters)
>mm_chr1_160475011_160475879
Length = 869
Score = 804 bits (416), Expect = 0.0
Identities = 456/474 (96%), Gaps = 9/474 (1%)
Strand = Plus / Minus
Query: 1 tgtcttaaatctcactagagacgtccaccatgggacccctgtgtgactgacatgaagaaa 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 669 tgtcttaaatctcactagagacgtccaccatgggccccctgtgtgactgacatgaagaaa 610
Query: 61 tggcctagatgactaaaagctagcactgtactggtttgtacaaactcacacagcaagaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tggcctagatgactaaaagctagcactgtactggtttgtacaaactcacacagcaagaga 550
Query: 121 aatacctgccttcttttcccttgggatttgccatctcatctgagatgggctcttttgcag 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aacacctgccttcttttcccttgggatttgccatctcatctgagatgggctcttttgcag 490
Query: 181 tctgtgctgggtgtttgttaggtggagggtgctaaagagggagtgactcagaagggtaaa 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tctgtgctgagtgtttgttaggtggagggtgctaaagagggagtgactcagaagggtaaa 430
Query: 241 gaaatc----ttttttttctcttcctctctaaagcaaccacagcgagatgacagccacaa 296
|||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gaaatcccag-----ttactcttcctctctaaagcaaccacagcgagatgacagccacaa 375
Query: 297 gctctgctcatccattctgacttaatgcttacgctgccgtgctgtgggatgaattgtgcc 356
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 374 gccctgctcatccattctgacttaatgcttacgctgccgtactgtgggatgaattgtgcc 315
Query: 357 ttgcctgaaatccagatgctagagctctcagtcactttgtgactattctggaaaaaaagg 416
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 314 ttgcctgaaatccagatgctagagctctcagtcgctttgtgactattctggcaaaaaagg 255
Query: 417 cctttaagaaggaatatggggttgagctcttattcagcaggactagtgtcctta 470
||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 254 cctttaagaaggaatatggggctgagctcttattcagcaggactagtgtcctta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 869
Length adjustment: 10
Effective length of query: 460
Effective length of database: 859
Effective search space: 395140
Effective search space used: 395140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
