Query= MSMg01no378_e24.b1 MSMg01no378_e24.b1 CHROMAT_FILE:
MSMg01no378_e24.b1 PHD_FILE: MSMg01no378_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:46 2005
(430 letters)
>mm_chr1_69786563_69787392
Length = 830
Score = 787 bits (407), Expect = 0.0
Identities = 425/437 (97%), Gaps = 10/437 (2%)
Strand = Plus / Minus
Query: 4 ggaattctctactgaatttaaggcattgtcagggaatcgcttggtgttcacaagaaggtg 63
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 799 ggaattctctactgaatttaaggcattgtcagggaattgcttggtgttcacaagaaggtg 740
Query: 64 aactattaaccaatgagaattaaata----------tctctctctctctctctctctctc 113
|||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 739 aactattaaccaatgagaattaaatatctctctctctctctctctctctctctctctctc 680
Query: 114 tttccctccttccctccctccctccctccctctctccctccctccctccatctatctgtc 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tttccctccttccctccctccctccctccctctctccctccctccctccatctatctgtc 620
Query: 174 tctctcagtttttcttgggtttctacttcttcagacacagggcacacatgtgagccttca 233
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tctctcagtttttcttgagtttctacttcttcagacacagggcacacatgtgagccttca 560
Query: 234 ttttagtctctgctttctggggaaacagagatgatagatgattccaggtacaacacaggg 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttttagtctctgctttctggggaaacagagatgatagatgattccaggtacaacacaggg 500
Query: 294 gtgtcagctctgccaacatgagactagaactgggctattgagtagttagacattaataag 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gtgtcagctctgccaacatgagactagaactgggctattgagtagttagacattaataag 440
Query: 354 gaccatgcccaaccccacactagtggtaaacgttcttcttaaatcatatcacaattctca 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gaccatgcccaaccccacactagtggtaaacgttcttcttaaatcatatcacaattctca 380
Query: 414 aagctttctctttgagt 430
|||||||||||||||||
Sbjct: 379 aagctttctctttgagt 363
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space: 345641
Effective search space used: 345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_e24.g1 MSMg01no378_e24.g1 CHROMAT_FILE:
MSMg01no378_e24.g1 PHD_FILE: MSMg01no378_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:46 2005
(517 letters)
>mm_chr1_69646237_69647154
Length = 918
Score = 845 bits (437), Expect = 0.0
Identities = 490/519 (94%), Gaps = 21/519 (4%)
Strand = Plus / Plus
Query: 1 tggggactttcctgtatgtctcctggcttcccataggagcatagggatta-cagatgcat 59
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 201 tggggactttcctgtatgtctcctggcttcccataggagcatagggattatc-gatgcat 259
Query: 60 agttactgtgggtgtccagggcccgtgaactcaggtcagcaggcaccttaaccactgagt 119
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agttactgtgggtgtccggggcccgtgaactcaggtcagcaggcaccttaaccactgagt 319
Query: 120 catctctcttctctctagccccacaaacagggctttt-aaagcaatcatgaatacaaata 178
|||||||||||||||||| |||| |||||||| |||| ||||||||||||||||||||||
Sbjct: 320 catctctcttctctctaggcccataaacagggttttttaaagcaatcatgaatacaaata 379
Query: 179 acaacattttaaaagggctgaattgaacctcatacaagtctgttaaagtacttaacattt 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acaacattttaaaaggactgaattgaacctcatacaagtctgttaaagtacttaacattt 439
Query: 239 tcccagtgacaaagctaccatatcagatagactttcactttatggaaaaatatattcata 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcccagtgacaaagctaccatatcagatagactttcactttatggaaaaatatattcata 499
Query: 299 tatattccacttatttcaaaacattgaccatgttttagtgaaatactggtgatactgaaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 500 tatattccacttatttcaaaacattgaccatgttttagtgaaatactggtgattctgaaa 559
Query: 359 tgttggcaatgttttacaaaatcattttcaatgataataataataataataataataata 418
|||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 560 tgttggcaatgttttacaaactcattttcaatgataataataataataataa-------- 611
Query: 419 ataataataaatgtccaactgtatgataaaacaagatacaaatgaatcagatctttttgg 478
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ----------atgtccaactgtatgataaaacaagatacaaatgaatcagatctttttgg 661
Query: 479 gacacattattacaaatgtattacgaatataatcttcct 517
||||||||||||||||||||||| |||||||||||||||
Sbjct: 662 gacacattattacaaatgtattaggaatataatcttcct 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 918
Length adjustment: 10
Effective length of query: 507
Effective length of database: 908
Effective search space: 460356
Effective search space used: 460356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
