BAC Information

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BAC

Clone NameMSMg01-378I22
Chromosome1 (Build37)
Map Location 130,512,851 - 130,689,777
singlet/doubletdoublet
Overlap genenone
Upstream geneTmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
Downstream geneLOC100042732, Thsd7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378I22.T7 (MSMg01no378_i22.b1)MSMg01-378I22.TJ (MSMg01no378_i22.g1)
ACCAG483376AG483377
length769747
length of high quality
(start - end)		483 (48 - 530)500 (80 - 579)
definitionCHROMAT_FILE: MSMg01no378_i22.b1 PHD_FILE: MSMg01no378_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:04 2005CHROMAT_FILE: MSMg01no378_i22.g1 PHD_FILE: MSMg01no378_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,689,384 - 130,689,777)(130,512,851 - 130,513,350)
sequence
NNCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACCAGAAGAATTTTGGAAAACTAAAAACCTAAAAACGCCTATA
TCCAAGCCTTATCCCTAGGAATAAGACACAAACAACTTGGGGTAGGAACA
TCAGTTATTTGGCAAGCATCTGTCTTGTGAGTCTTCGTATGAACGTGTGT
GAGTGTGTGTACATGTGTGTGCAAGTGTCTGAGCCCATAGATATATCTGG
GGAAGCCTGAGGTTGACACCAGATGTCATTCTATATCACTGACCACCTTA
TTTTTTTAAAAGCACTTCTCATGGACTCTGAAGCTTGCCTTGCAATACGG
TCTAGGCTGGCTGGCCAGGGAACCCCAAGGACCCTCCTGTCTCTACCTTC
TCAGCATTAGTTTCAGACTCAAAAGTAGATTCTGGAGACCAGAACTCAGA
CCCTCATATTTGTACAAGAAGCACACGACCCACTTTGCCATCTCCTTTGC
TTGCCCGTCTGGCAGTTTTCTATCTTCATGCGTGAAGGTTTCTTATGGCA
GTGGGATTGAACCCTTGGCCTTGGACCTACAAGAAAACACTCTGCCTCTA
ACTATGCCCGCATGTTAATGATTCTGCCCCATTATTTTATATTTGAGAAT
GCCCCCCCGGGAGGGCAAAGGCGCTGGGATTTTGAATTGACTTAAATCCG
GGCTTGGCCGGCGTGACCGGGAAAATAAACTCTTTTTTCGGAAGCCTTCC
AAAAAATAGAGAATTTTTT

NNCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTGAGGCAGTCTTTCTT
TTCTTTTTCTTTTTGAGATGGGGCCCAGGCTGGACTTGAAACCCTGAATG
CTTGGATTGTAGACATGTGCCACCACACCTTGCTGGAGCTTTCTGGTTTA
ATTAGTGAAGTCCAGGAGACTAAAATCTGAGTTTATATTTTCTTTTAAAA
AGAGGATGGTGAAGCATCATTTGCCCTTGCTGCACTAAAGGGCCCTTTCA
GCATTCTGGGTTTTGATTTTTGAGGCTTATCTTGATTACATTCTGCAATG
GCAGTGTAAAATTCACCTGCATAACTGGAGTGCCCAGAAGAGGGTAGGGA
GAGCAGACCACTGGGGAACACCCCATTCCCTGGCAACTCCCATCTTCATC
TGCAACCTTCCTGCCTGACCAGTTCCCACCTGATCTAGTTCTAACTGTGC
CACCCTGACCTTGATGCTTGATGTTGCTAGCCCTTCTGAGCTATTTGTAC
ATTTCCAGCATCTTGGCTCTCTTCTTCCTAGAAACTGGGCTGGGGCTGGC
TCAAGTCCTACTCCTTCAGGGTAACAACTGAAAGACTAGAAAGAATGCCG
CCTGGGGGATGACTTTGGCTTTTGATAAAGGAACTGAGAATTTCCCCTAA
GGTAAACCCTGTGGCCCAAAACGATGATACATTTCTCCCCCCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_i22.b1 MSMg01no378_i22.b1 CHROMAT_FILE:
MSMg01no378_i22.b1 PHD_FILE: MSMg01no378_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:04 2005
         (483 letters)



>mm_chr1_130689384_130690266
          Length = 883

 Score =  762 bits (394), Expect = 0.0
 Identities = 394/394 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccagaagaattttggaaaactaaaaacctaaaaacgcctatatccaagcctta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gaattcaccagaagaattttggaaaactaaaaacctaaaaacgcctatatccaagcctta 335

                                                                       
Query: 65  tccctaggaataagacacaaacaacttggggtaggaacatcagttatttggcaagcatct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tccctaggaataagacacaaacaacttggggtaggaacatcagttatttggcaagcatct 275

                                                                       
Query: 125 gtcttgtgagtcttcgtatgaacgtgtgtgagtgtgtgtacatgtgtgtgcaagtgtctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gtcttgtgagtcttcgtatgaacgtgtgtgagtgtgtgtacatgtgtgtgcaagtgtctg 215

                                                                       
Query: 185 agcccatagatatatctggggaagcctgaggttgacaccagatgtcattctatatcactg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 agcccatagatatatctggggaagcctgaggttgacaccagatgtcattctatatcactg 155

                                                                       
Query: 245 accaccttatttttttaaaagcacttctcatggactctgaagcttgccttgcaatacggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 accaccttatttttttaaaagcacttctcatggactctgaagcttgccttgcaatacggt 95

                                                                       
Query: 305 ctaggctggctggccagggaaccccaaggaccctcctgtctctaccttctcagcattagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctaggctggctggccagggaaccccaaggaccctcctgtctctaccttctcagcattagt 35

                                             
Query: 365 ttcagactcaaaagtagattctggagaccagaac 398
           ||||||||||||||||||||||||||||||||||
Sbjct: 34  ttcagactcaaaagtagattctggagaccagaac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no378_i22.g1 MSMg01no378_i22.g1 CHROMAT_FILE:
MSMg01no378_i22.g1 PHD_FILE: MSMg01no378_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:04 2005
         (500 letters)



>mm_chr1_130512651_130513550
          Length = 900

 Score =  967 bits (500), Expect = 0.0
 Identities = 500/500 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcttgaggcagtctttcttttctttttctttttgagatggggcccaggctggacttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcttgaggcagtctttcttttctttttctttttgagatggggcccaggctggacttga 260

                                                                       
Query: 61  aaccctgaatgcttggattgtagacatgtgccaccacaccttgctggagctttctggttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccctgaatgcttggattgtagacatgtgccaccacaccttgctggagctttctggttt 320

                                                                       
Query: 121 aattagtgaagtccaggagactaaaatctgagtttatattttcttttaaaaagaggatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattagtgaagtccaggagactaaaatctgagtttatattttcttttaaaaagaggatgg 380

                                                                       
Query: 181 tgaagcatcatttgcccttgctgcactaaagggccctttcagcattctgggttttgattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaagcatcatttgcccttgctgcactaaagggccctttcagcattctgggttttgattt 440

                                                                       
Query: 241 ttgaggcttatcttgattacattctgcaatggcagtgtaaaattcacctgcataactgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgaggcttatcttgattacattctgcaatggcagtgtaaaattcacctgcataactgga 500

                                                                       
Query: 301 gtgcccagaagagggtagggagagcagaccactggggaacaccccattccctggcaactc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgcccagaagagggtagggagagcagaccactggggaacaccccattccctggcaactc 560

                                                                       
Query: 361 ccatcttcatctgcaaccttcctgcctgaccagttcccacctgatctagttctaactgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccatcttcatctgcaaccttcctgcctgaccagttcccacctgatctagttctaactgtg 620

                                                                       
Query: 421 ccaccctgaccttgatgcttgatgttgctagcccttctgagctatttgtacatttccagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaccctgaccttgatgcttgatgttgctagcccttctgagctatttgtacatttccagc 680

                               
Query: 481 atcttggctctcttcttcct 500
           ||||||||||||||||||||
Sbjct: 681 atcttggctctcttcttcct 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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