BAC Information

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BAC

Clone NameMSMg01-378J04
Chromosome1 (Build37)
Map Location 58,712,302 - 58,712,818
singlet/doubletsinglet
Overlap genenone
Upstream gene2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397
Downstream geneAls2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973, Sumo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378J04.T7 (MSMg01no378_j04.b1)MSMg01-378J04.TJ (MSMg01no378_j04.g1)
ACCAG483388AG483389
length759758
length of high quality
(start - end)		548 (48 - 595)517 (78 - 594)
definitionCHROMAT_FILE: MSMg01no378_j04.b1 PHD_FILE: MSMg01no378_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:05 2005CHROMAT_FILE: MSMg01no378_j04.g1 PHD_FILE: MSMg01no378_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:06 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTCTGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCCTATTGACGGTGTGTGACCAGTATTCTTCATTTCAACTCCTA
TTGTTCCCATTTTCCATCAGTGTTTTCTTTTGGTCTGACTTCCTGAGTCT
TAACCTTGCATATGTTTATTGTTGTCCATGTATTTTAAATGCTTTACATT
ATCATTTTGTGTGTACGAGTGCTTTTATCGCATGTATGTGTGTGCACCAC
ATGCATGCCTGGTGCCTGCAGAGGCCAGAAGAAGAGAGTGACTCCTCTGG
AACTGGAGATACAGGCAGCATGAGAGCTGCCATGTGGGTGCTGGGAATTG
AATCTGAAGCCTCAGAACAAGCAGTCAGTGCTTTTAACTACTGAGTCACC
TGTAGAGAGAGCATCTTATGTGCATTGTATGGATGCACTACCTGTCAATT
TAAAAGCCTATGGCCTATGGCTTAAGCAGGAAAGAGAAGGTGGGACATTG
AGAGGAGAAAGAATTCTTGGTAAGAATTGGTAGGAAATATTTTATGTATA
TGAGAACACAGTATCTGTCTTCCTACTTTCGGGAAAAGGCAAAAGATCTC
TTTACCAAG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATGGGTTCACCTTTAATCCCAG
CACTCTGGAGGCAGAGGCAGGAGGATCTCTGAGTTCAAAGCCAACCTGCT
CTACATAGCAAGTTCTGAGATAGCCAGGACTACACAGAGAAAGCTTGTCT
TGAAAAAAACAAACTTGAAGATGCATGAGTAAGAAAGCAAGACTGGAACA
TAAACCTGTTTAACAGAATGGGTGAATGACGGGAGCAGGGACCTGGGGCA
AGTTAACAGAGTGGGTGAAAGAACATGGACCTGAGACAAGTTAACAAAGG
GGGTGAATGATGGGAGCAGGGACCTGGGGTGAGAAAGGGGTGAATATCAT
CAGCATTTTGCTGCATGAAATTCTCAGAGGTAATAAAAAATATTAAACTT
TTTTCTGTGCAGTATCTAATTCTTCCAGGTTAGTTTTTCATTAGTCTCTG
GGTATTTCATGTAGTCCTTCAGAGTGAGAGCTATTAGGGAGCATGGGGGA
TAATGGAAAGGAAAGGGTCCCCTTGTTTGTGGAGAGCATTAACTGTANAA
ACACTTCTGAGGCTAAATGTGGTTAAGTGTTAGCCTGTACCAGGATGAGG
AGATAGCTCAGTGGTTAAAGAACTTGCCAAGCAAACTAAGGGGCCTGATT
TCAGCTTTCAGCGAACAATGTAAATAGCGATGTTTGATGGTCACGTCGCC
CCCTCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_j04.g1 MSMg01no378_j04.g1 CHROMAT_FILE:
MSMg01no378_j04.g1 PHD_FILE: MSMg01no378_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:06 2005
         (517 letters)



>mm_chr1_58712102_58713018
          Length = 917

 Score =  992 bits (513), Expect = 0.0
 Identities = 516/517 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgggttcacctttaatcccagcactctggaggcagaggcaggaggatctctgagttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgggttcacctttaatcccagcactctggaggcagaggcaggaggatctctgagttca 260

                                                                       
Query: 61  aagccaacctgctctacatagcaagttctgagatagccaggactacacagagaaagcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagccaacctgctctacatagcaagttctgagatagccaggactacacagagaaagcttg 320

                                                                       
Query: 121 tcttgaaaaaaacaaacttgaagatgcatgagtaagaaagcaagactggaacataaacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttgaaaaaaacaaacttgaagatgcatgagtaagaaagcaagactggaacataaacct 380

                                                                       
Query: 181 gtttaacagaatgggtgaatgacgggagcagggacctggggcaagttaacagagtgggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttaacagaatgggtgaatgacgggagcagggacctggggcaagttaacagagtgggtg 440

                                                                       
Query: 241 aaagaacatggacctgagacaagttaacaaagggggtgaatgatgggagcagggacctgg 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 aaagaacatggacctgagacaagttaacaaagggggtgaatgatgggagcggggacctgg 500

                                                                       
Query: 301 ggtgagaaaggggtgaatatcatcagcattttgctgcatgaaattctcagaggtaataaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtgagaaaggggtgaatatcatcagcattttgctgcatgaaattctcagaggtaataaa 560

                                                                       
Query: 361 aaatattaaacttttttctgtgcagtatctaattcttccaggttagtttttcattagtct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatattaaacttttttctgtgcagtatctaattcttccaggttagtttttcattagtct 620

                                                                       
Query: 421 ctgggtatttcatgtagtccttcagagtgagagctattagggagcatgggggataatgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgggtatttcatgtagtccttcagagtgagagctattagggagcatgggggataatgga 680

                                                
Query: 481 aaggaaagggtccccttgtttgtggagagcattaact 517
           |||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaggaaagggtccccttgtttgtggagagcattaact 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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