NNTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTGAAATTTTACAAATTTAAAATTTATATAAACAGAAACTTA
TTTGGCTGTAAGCATATACAAGCGACAAAACTCATAAAAATTGAATTATT
CTTGCTGTAACAATATTTCATTGAAATAGTTGTACTAATATCAGAGAAAT
TCTTTAGATATTTAAATTTAGTACTAAATATGTATACATACAAATATGCA
TACACTAATCATATAGTTTAATGTACTCTCAAATTTTTATTTGCATACAA
TAATTCTATGACTCTAAACATTGATTTATAAAACAAATTACATGAATGAC
ATTTTAAAGTGAAGTTAGCCTATAAAACCCACTAGATTCTGTCACTGTTG
TCTCTGAAGATGATTTTATAGATTTACAGGGAAAATAATGTTAAATAACA
TAGGTGTAGAAATGGGATTTCAGTCGTCACAAGCACCAGAATTGTGACAG
TCACCAGGAATTTGAGCAGGCAGAGAATCACTTTATTTAGCTCCTCAGAA
GAACCAAACCTACCAGAATGATGAAAAAATATGATTCTATTGCTTTGAGT
CACAAAAGTCATGGCCGTTTATTATGTTTACCTCTAGAAGATTAGAAAAT
ATCTTTGAANATTGTAAACAAAACATTTCACAGTGTTGAAATACTGGTTT
AGAAGTGATGATTANNACAATACTCTCTTGTTGCTGTGTATAAAATTTAN
GCCCTATGGATGG

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGTCCATACCTAAACATGATA
AAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAA
GCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTT
CTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGA
CAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAAT
ATCACTTTTTGCAGACGATATGATAGTATATATAAGTGACCCTAAAAATT
CCACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGA
TATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAA
ACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAA
ATAATATAAAATATCTTGGCGTGACTCTAACTAAGGAGGTGAAAGATCTG
TATGATAAAAACTTCAAATCTCTGAAGAAAGAAATTAAAGAAGATCTCAG
AAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAATATTGTAA
AAATGGCTATCTTGGCCAAAGCAAATTACAGATTCAATGCAATCCCCATC
AAAATTTCCACTCCATTCTTCAACGAATTGGAAGGAGCATTTTGCAAATT
TGTCTGGGATAAAAAAAAACTAGGG

Query= MSMg01no378_l19.b1 MSMg01no378_l19.b1 CHROMAT_FILE:
MSMg01no378_l19.b1 PHD_FILE: MSMg01no378_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:18 2005
         (593 letters)



>mm_chr1_27937309_27938301
          Length = 993

 Score = 1108 bits (573), Expect = 0.0
 Identities = 585/589 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgaaattttacaaatttaaaatttatataaacagaaacttatttggctgtaag 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgaaatttgataaatttaaaatttatataaacagaaacttatttggctgtaag 264

                                                                       
Query: 65  catatacaagcgacaaaactcataaaaattgaattattcttgctgtaacaatatttcatt 124
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 265 catatacaagcgacaaaactcataaaaattgaattattcttgctttaacaatatttcatt 324

                                                                       
Query: 125 gaaatagttgtactaatatcagagaaattctttagatatttaaatttagtactaaatatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaatagttgtactaatatcagagaaattctttagatatttaaatttagtactaaatatg 384

                                                                       
Query: 185 tatacatacaaatatgcatacactaatcatatagtttaatgtactctcaaatttttattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatacatacaaatatgcatacactaatcatatagtttaatgtactctcaaatttttattt 444

                                                                       
Query: 245 gcatacaataattctatgactctaaacattgatttataaaacaaattacatgaatgacat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcatacaataattctatgactctaaacattgatttataaaacaaattacatgaatgacat 504

                                                                       
Query: 305 tttaaagtgaagttagcctataaaacccactagattctgtcactgttgtctctgaagatg 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 505 tttaaagtgaagttagcctataaaacccactagattctgtcactgttgtctccgaagatg 564

                                                                       
Query: 365 attttatagatttacagggaaaataatgttaaataacataggtgtagaaatgggatttca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attttatagatttacagggaaaataatgttaaataacataggtgtagaaatgggatttca 624

                                                                       
Query: 425 gtcgtcacaagcaccagaattgtgacagtcaccaggaatttgagcaggcagagaatcact 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtcgtcacaagcaccagaattgtgacagtcaccaggaatttgagcaggcagagaatcact 684

                                                                       
Query: 485 ttatttagctcctcagaagaaccaaacctaccagaatgatgaaaaaatatgattctattg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttatttagctcctcagaagaaccaaacctaccagaatgatgaaaaaatatgattctattg 744

                                                            
Query: 545 ctttgagtcacaaaagtcatggccgtttattatgtttacctctagaaga 593
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctttgagtcacaaaagtcatggccgtttattatgtttacctctagaaga 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)