BAC Information

Click to search

BAC

Clone NameMSMg01-378L20
Chromosome1 (Build37)
Map Location 95,711,221 - 95,711,627
singlet/doubletsinglet
Overlap geneIng5
Upstream geneGpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk
Downstream geneD2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378L20.T7 (MSMg01no378_l20.b1)MSMg01-378L20.TJ (MSMg01no378_l20.g1)
ACCAG483516AG483517
length795800
length of high quality
(start - end)
433 (52 - 484)421 (77 - 497)
definitionCHROMAT_FILE: MSMg01no378_l20.b1 PHD_FILE: MSMg01no378_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:18 2005CHROMAT_FILE: MSMg01no378_l20.g1 PHD_FILE: MSMg01no378_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCACCTGATGCATACCGAATGGCAGAGAAGCACCTGAAA
AAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCT
GAGAATCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTG
ACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGT
TGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGTGGTT
CCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCC
TGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACC
TAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACA
CAATGGAGTACTACTCAGCTATTATNAAGAATGAATTTATGAAATTCCTA
GCCCAATGGATGGACCTGGAGGGCATCCTCCTGAGTGAGGAAACACATTC
CCAAGGAACTCACACAATATGTACTCCCTGATAAGTGGAATTTAGCCCCC
AACCTAGAAACCCCAGAAATAAGAAACAATTTGTTATAACATGGAACTCA
CAAAAAAGGAAAACGAAAGGGGGGAACCATGGCCCCTCCCCAAAAAGGGA
ACAAAACCCCTCGGAAGGGGTTATAAAACTAATTTTGGGTCCTTA
NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGTCCCAGCTTTCCAAGTGCT
GCCTTAAAGATGGGTGACCCCATAGCTCACTGACTGAACCTGGAGATGCT
GAGCTCTAGGTCACCTGATAGCTGACTGTCTGTGACTGTTGGGTGGAGCT
TCCCATAGGAAAGTACAGAGGTAGCCAATAGAATTGAGCTACAGAGCCAG
GCACACTCCTGGCCTTGGCTACTGATGGTAGGGCCATCCAGAGGCCATGA
AAGCCAGGAGGCAAGGCACAGAGTCACAGATCTTAAAGAAAGTTTCCTGC
TGGGCAGTGGTGGCACACGCCTTTAATTCCAGCACTTGGGAGGCAGAGGC
AGGTGGATTTCTGAGTTCAAGGCCATCCTGGTCTACAGAGTGAGTTCCAG
GACAGCTGGGGCTATACAGAGAAACCCTGTCTTGAANAAAAACAAACTAA
AAAACAAAACAAAAAAAGAAAGTTTCCTGCTTGAAGGACCTCTTGGGAGT
TGCTTACAAACAGTATTGTGGAGCACTAGGACTTGGACATGTTTCTGTGA
CATTTCTATTCAAAGAGACAAGTGAGTGGAGGTATTGGTTTCCTGTCTAT
GGAGGCCCCCTTTTTTCCACCCTCTTTTATGCTTTGATTGCCCCCCCATA
TTCTTCCCCCCTCCCTGTCCCCCCCAATTTTCCGTGTTTATCCCCCCGCC
ACCCCCTTTCCCACTTTTTTTGTTCGTTTCCCCTCCCCGTTTTTTTCTTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_l20.g1 MSMg01no378_l20.g1 CHROMAT_FILE:
MSMg01no378_l20.g1 PHD_FILE: MSMg01no378_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:18 2005
         (421 letters)



>mm_chr1_95711021_95711841
          Length = 821

 Score =  737 bits (381), Expect = 0.0
 Identities = 405/421 (96%), Gaps = 14/421 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttgtcccagctttccaagtgctgccttaaagatgggtgaccccatagctcactgactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttgtcccagctttccaagtgctgccttaaagatgggtgaccccatagctcactgactg 260

                                                                       
Query: 61  aacctggagatgctgagctctaggtcacctgatagctgactgtctgtgactgttgggtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacctggagatgctgagctctaggtcacctgatagctgactgtctgtgactgttgggtgg 320

                                                                       
Query: 121 agcttcccataggaaagtacagaggtagccaatagaattgagctacagagccaggcacac 180
           |||||||||||||||||||||||||||||||||||||||||||             ||||
Sbjct: 321 agcttcccataggaaagtacagaggtagccaatagaattgagc-------------acac 367

                                                                       
Query: 181 tcctggccttggctactgatggtagggccatccagaggccatgaaagccaggaggcaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tcctggccttggctactgatggtagggccatccagaggccatgaaagccaggaggcaagg 427

                                                                       
Query: 241 cacagagtcacagatcttaaagaaagtttcctgctgggcagtggtggcacacgcctttaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cacagagtcacagatcttaaagaaagtttcctgctgggcagtggtggcacacgcctttaa 487

                                                                       
Query: 301 ttccagcacttgggaggcagaggcaggtggatttctgagttcaaggccatcctggtctac 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 488 ttccagcacttgggaggcagaggcaggtgaatttctgagttcaaggccatcctggtctac 547

                                                                       
Query: 361 agagtgagttccaggacagctggggctatacagagaaaccctgtcttgaanaaaaacaaa 420
           ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 548 agagtaagttccaggacagctggggctatacagagaaaccctgtcttgaa-aaaaacaaa 606

            
Query: 421 c 421
           |
Sbjct: 607 c 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)