BAC Information

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BAC

Clone NameMSMg01-378O12
Chromosome1 (Build37)
Map Location 80,257,573 - 80,258,028
singlet/doubletsinglet
Overlap genenone
Upstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik
Downstream geneCul3, EG620899, 1700016L21Rik, Dock10, LOC665092, 9430031J16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378O12.T7 (MSMg01no378_o12.b1)MSMg01-378O12.TJ (MSMg01no378_o12.g1)
ACCAG483644AG483645
length7521,294
length of high quality
(start - end)
455 (73 - 527)---
definitionCHROMAT_FILE: MSMg01no378_o12.b1 PHD_FILE: MSMg01no378_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:30 2005CHROMAT_FILE: MSMg01no378_o12.g1 PHD_FILE: MSMg01no378_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGG
AATTCTTCATTTTCCATCGTAATGTTCAAACCAAGGCTAAAAATAGAATC
TCTTCAAGCCATCTAGACTGAAAATTGTCAGGAAAACGCTGAATATTTAT
GGACATAATTTGCAAAGTTGGTTATACAAATCCCAATTTTTGCCACCCAG
ACTAAGTCACATCATAACCCATGGTTCTAGTGGGACAATTCCAAACTCAC
ATCAATAGGCACTTGCTCTTGACTCATCTAACACTGTTGCCTAAACTGGT
ACTTGTAGGAGAAAAGTCCTCATACTCCAAATGCGGGGTTCCTAAGTTCA
TTTTCTCTTAGTGATAAGGCCTATCCGAGACCACAGGTTGCCACTTCTCT
GTGGAGGCAATGTGGTGGACTAACAATAGCTTGGCTATAATGCATGTGAC
CTGTGACCAGGAGCCCATTTCTTACAAACACACTTTGCCTTGAGAAACAC
AGTTATAGCCAGCTGAAGTTTAAATACAAAATACTAAAGCATCTTACAAT
TTATTAAGAATAACCCTAGCTAATTAATGAAACTGGGAGTTAGTGCAACA
CAACTGTAAAACAATGGCTCCCCTAGTTGTTCCGTCTCACCTTGCACCTA
TAAAGCCATAATATTGCTCAAGGGACTCCCACCCCCCAAAAAAAAAGGCT
CCTCTAGGTTCTGGTGTGCCCTTACGATAACCACCCGCCAAAGCTCAGCT
AC
GCAATGGACCTTAGGATTAAAGTTCTTGGGGGAGCCTGCCCTTGGTTTCC
TCATAAAAATGTCAGGGGGGACGCCGACGGGGGATTGTTTCCCTCCTCCA
CATTCGCTGGAGGNNGGNNCTTGGGGCCTACTGTCGGCTAGACACACCCC
TTGTTCCCTTGCACGCGTGTCTTTGTCCCCCGTGTAATGAATTATGGTAA
TGTATCGAGCGTATACGAAGCAGGTACTTTACCGTAAGTAAGCAACGGAA
GGACTGGAGTGACCGTATTCAACTTATCTACTTATTTACTTCTAGCGTAT
TATCGATTTTATTGCACGTATCGCCTCTATTGTACGGCTGTGTTTGTATC
TCATCTCACCTTTCTATCCCATCGTCCTTTCTTTTCTCTTCAGCGCGCAG
GATGTATTTTTTTTTGAGACCGATTTCGTACGCATTTGATTCCATTTACT
CCCGGATTTTTTCCGGTTAATCTGTTGTGTTGCGGCCCGCCTCCGTTATT
TTATATAGTCCCGTTGTCATGGATTATAATTTATAGCGGTAGNGCGCCCG
TAGTCGCGTTGCCGCGTAGTATGTAGCCGCGGGGGATCGCGGGAGTGAGA
TCGCCGCGCTGTACCGTTCGCCGTATCTTTATTTGTATCCCGGATATCTT
CCTGTGGATGTATCTCGTTTGCCGCGCCTAAGTCNTAGCAATTCTATCTT
GAGCGCCTGTTATCTTGCACCCGGCCGTTAAATGACTTTAAACGCAGCGG
TATATGGTCTGATGATCAGTGTGCGTGCCGCGGGCCCGGCTACAATAATA
TTGCGCTAGCTACGCTCTTCGGGTACCTATAATGTATCTGCGCATGTCGC
TCCCTTACCGTCACTGTATTATATTTGCGCTCGTACTTCCTCTGTCTCGT
TATTTCTATGCGGCGGTGCTCGATGTGGCTATCGTGTGTGGTCGAGTAAC
CGTGATGTCTCCCATCAACAATGTCGTTTGCGCTCGTGGTCGTCACCATA
TATCTTCGCGTCATAACGCCCAGCTCTCTAGCTCATATTATGTTCACGAC
GCCGNTATAGATACGCCGGCACACACTAACGCCGCCCCTATCCTTCCCGC
GCCCTGTGTCACCNCGTCGCTATGCCGCAATATAGATGAACGGAGACTTG
TCTATACCGAGAGNTGCTCGTCAGAAATTTATTAGCGCGTCCGCCGCCTT
TCTTATTATATCTTCGTCTCCCACCTCGAGATCTCTAGAGCGCGACCCGT
GCTGCACCCTGCTGCGTTTATTGCGCCCGCCGGTGTGTATATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_o12.b1 MSMg01no378_o12.b1 CHROMAT_FILE:
MSMg01no378_o12.b1 PHD_FILE: MSMg01no378_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:30 2005
         (455 letters)



>mm_chr1_80257373_80258228
          Length = 856

 Score =  843 bits (436), Expect = 0.0
 Identities = 451/456 (98%), Gaps = 1/456 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttcaaaccaaggctaaaaatagaatctcttcaagccatctagactgaaaattgtcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttcaaaccaaggctaaaaatagaatctcttcaagccatctagactgaaaattgtcagg 260

                                                                       
Query: 61  aaaacgctgaatatttatggacataatttgcaaagttggttatacaaatcccaatttttg 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatgctgaatatttatggacataatttgcaaagttggttatacaaatcccaatttttg 320

                                                                       
Query: 121 ccacccagactaagtcacatcataacccatggttctagtgggacaattccaaactcacat 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 ccacccagactaagtcacatcataacccatggatctagtgggacaattccaaactcacat 380

                                                                       
Query: 181 caataggcacttgctcttgactcatctaacactgttgcctaaactggtacttgtaggaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caataggcacttgctcttgactcatctaacactgttgcctaaactggtacttgtaggaga 440

                                                                       
Query: 241 aaagtcctcatactccaaatgcggggttcctaagttcattttctcttagtgataaggcct 300
           |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagtcatcaaactccaaatgcggggttcctaagttcattttctcttagtgataaggcct 500

                                                                       
Query: 301 atccgagaccacaggttgccacttctctgtggaggcaatgtggtggactaacaatagctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atccgagaccacaggttgccacttctctgtggaggcaatgtggtggactaacaatagctt 560

                                                                       
Query: 361 ggctataatgcatgtgacctgtgaccaggagcccattt-cttacaaacacactttgcctt 419
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 ggctataatgcatgtgacctgtgaccaggagcccattttcttacaaacacactttgcctt 620

                                               
Query: 420 gagaaacacagttatagccagctgaagtttaaatac 455
           ||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagaaacacagttatagccagctgaagtttaaatac 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 856
Length adjustment: 10
Effective length of query: 445
Effective length of database: 846
Effective search space:   376470
Effective search space used:   376470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)