Query= MSMg01no379_d14.b1 MSMg01no379_d14.b1 CHROMAT_FILE:
MSMg01no379_d14.b1 PHD_FILE: MSMg01no379_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:56 2005
(264 letters)
>mm_chr1_164211114_164211778
Length = 665
Score = 441 bits (228), Expect = e-128
Identities = 249/256 (97%), Gaps = 2/256 (0%)
Strand = Plus / Plus
Query: 1 aaaaattaaattctgaaacaggtttcagaataaaaacccacttatctttaaaatgatgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaattaaattctgaaacaggtttcagaataaaaacccacttatctttaaaatgatgtt 260
Query: 61 taaggcattggactttataactcacttgaatgggtgatgctttttatttttaaaaaatgt 120
|| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 261 tagggcattggactttataactcgcttgaatgggtgatgctttttattttaaaaaaatgt 320
Query: 121 ttatttgggggggattataatataattacatcatttccctcttccctttcctccctccat 180
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttattttggggg-attataatataattacatcatttccctcttccctttcctccctccat 379
Query: 181 accatccatatacccctctttgctcttttgcaaactcatgacctctttttaattaactgt 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 380 accatccatatacccctctttgctcttttgcaaacacatgacctctttttaattaactgt 439
Query: 241 tgtcacatacatatat 256
|||||| |||||||||
Sbjct: 440 tgtcac-tacatatat 454
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 665
Length adjustment: 9
Effective length of query: 255
Effective length of database: 656
Effective search space: 167280
Effective search space used: 167280
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no379_d14.g1 MSMg01no379_d14.g1 CHROMAT_FILE:
MSMg01no379_d14.g1 PHD_FILE: MSMg01no379_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:56 2005
(435 letters)
>mm_chr1_164363496_164364330
Length = 835
Score = 787 bits (407), Expect = 0.0
Identities = 425/431 (98%)
Strand = Plus / Minus
Query: 1 tctgctagagaaagaggaaatgatattattttcctagagaacaaactcagtagctatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tctgctagagaaagaggaaatgatattattttcctagagaacaaactcagtagctatttg 727
Query: 61 aaacacttaaaaaggtttcccaatacgcacagagctggcgcagattcgggaaatgacggt 120
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 726 aaacacttataaaggtttcccaatacgcacagagctggcgcagatgcgggaaatgacggt 667
Query: 121 ggtgggatcctctagcatcctgacattggctggaaagaattgtgctgtaaggaggaggga 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 666 ggtgggatcctctagcatcctgacattggctggagagaattgtgctgtaaggaggaggga 607
Query: 181 gtccattgacaagtgggaggggagctcctgctgtcttcctccttgacctcctgacctgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gtccattgacaagtgggaggggagctcctgctgtcttcctccttgacctcctgacctgga 547
Query: 241 gtaactcatgtagctgttttcagcattgggggtgggggcgataaggctgcttcttggaaa 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 546 gtaactcatgtagctgttttcagcattgggggtgggggcgataatgctgcttcttggaaa 487
Query: 301 cttgctagattccatgaggattgaatgtgatgacacagagcactgtgtgcatggaagtta 360
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 486 cttgttagattccatgaggattgaatgtgatgacacagagccctgtgtgcatggaagtta 427
Query: 361 gccaggtgccaggacatctgacagcaaccttcttcagaggtggggagaatcacaatcctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gccaggtgccaggacatctgacagcaaccttcttcagaggtggggagaatcacaatcctc 367
Query: 421 tatctttttgt 431
|||||||||||
Sbjct: 366 tatctttttgt 356
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space: 351876
Effective search space used: 351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
