BAC Information

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BAC

Clone NameMSMg01-379D21
Chromosome1 (Build37)
Map Location 64,464,556 - 64,464,978
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1
Downstream geneLOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379D21.T7 (MSMg01no379_d21.b1)MSMg01-379D21.TJ (MSMg01no379_d21.g1)
ACCAG483901AG483902
length764770
length of high quality
(start - end)		497 (57 - 553)375 (70 - 444)
definitionCHROMAT_FILE: MSMg01no379_d21.b1 PHD_FILE: MSMg01no379_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:57 2005CHROMAT_FILE: MSMg01no379_d21.g1 PHD_FILE: MSMg01no379_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCTGTCCTGATAGGCAGTCTTGAAAAGCTCATATGCTTGTGTTA
TATGAATTAGCAATTATATAAAATGACTTTCCAATATCCACTTTTCCATG
ATTTTACAGGGAGGGGGAATATGGTGCAGACACATGGAATAACTGAATTA
ACCTTAAACAGCCACAATGGAGTGGTCAGAAAATAGAAGGTTCAGAGAAT
CAAACATTGCCCAAGAAAGGATGCTTTTATGTTATCTATCTATCTATCTA
CCTATCTATCTATCTACCTACCTACCTATCTAAATTTAATTAATATCTAT
GTTAATATAAATTTAAGTTGTTAGTTAACTACTATGATTTTGACTGTTGG
TTGCCCATCCAAATGTGTGTCCTTTAGGAGATGGTTAGAAAATTCTGCCC
TCATGAATGGATGTTATTAAACAGTTGTTGCTACTATCTATCTTCTCCCC
CACCCCCTCTTTTTGCCTTTATGTCTGTGCCATGGAAGACATAGCAAGAA
GATACTCAGTAGACNACAACTACCAGATCTTGGACTTCCCTAGCCCCCTG
AAACTAATAATAAAATCCTAGTATTTTAAATGACCTCATGGCCCGTATTT
TTGTCTTAACATCAAACTGGGGCTAAGACCTACTTATTTTTATGGTAAAG
CAAGGGTTCCAAATTTTCCAAAAGGTGCCGCCCCTAAAAAAGTAACACAG
GCTGGGGGGACCCC

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTGATGAGATCTGAAGGCTGTACTAATCTG
TGGGTATAGACATGCAAATTCAGATGAAAATTTGATATTACATCCATTTA
GCAAACAACCATAGAAGATTTACCCCTGGGATCTATGGTCAGATGTATTG
TACAAGTGTGCTTCTCCTCCTCCTGCATCCATGTGCATCTATTCCCATGA
GGGCCAAAGCAACTCTTAAAAAAGAATTTAATTGGGAGCTTACTCACAGT
TTCAAAGGTGGTGCACATTGTCATCATGACAATGAACTTAGAGCTGGAGC
AGTAGCTACTCCTGCTCCCCTACAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGGGAGACTGGGAGATTGGGAGACTGGGAGANTGG
GNNNGGNGNGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGNGNNNGGG
NGGGGGGGGGGGGGGNNNNNGGGGGGGGGGGGGNNGGGNNNNNNGGGGGN
GGGGGGGGGGGGGGGNGGGGNNGGGGNGGGGNNNGGGNGGGGGGGGGNNN
GGGGGGGGNNGGGGGNGGGGGNGGGGGGGGGGGGGGGNGGGNGGNGGNNG
GGNNGGGGGGNNNNGNGNNGGGGGGGNNGGGGNGNTTGNNGGNGGGGGNN
GGGNGGTGGGGGGGGGGGGNGGGGGGNGGGGGGGGGGGGGNNNNGGGTTT
GNTTNGGTTTGTTTTGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_d21.b1 MSMg01no379_d21.b1 CHROMAT_FILE:
MSMg01no379_d21.b1 PHD_FILE: MSMg01no379_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:57 2005
         (497 letters)



>mm_chr1_64464553_64465449
          Length = 897

 Score =  675 bits (349), Expect = 0.0
 Identities = 398/427 (93%), Gaps = 22/427 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtcctgataggcagtcttgaaaagctcatatgcttgtgttatatgaattagcaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tctgtcctgataggcagtcttgaaaagctcatatgcttgtgttatatgaattagcaatta 367

                                                                       
Query: 61  tataaaatgactttccaatatccacttttccatgattttacagggagggggaatatggtg 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tataaaatgattttccaatatccacttttccatgattttacagggagggggaatatggtg 307

                                                                       
Query: 121 cagacacatggaataactgaattaaccttaaacagccacaatggagtggtcagaaaatag 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 306 cagacacatggaataactgaattaaccttaaacagccaccatggagtggtcagaaaatag 247

                                                                       
Query: 181 aaggttcagagaatcaaacattgcccaagaaaggatgcttttatgttatctatctatcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aaggttcagagaatcaaacattgcccaagaaaggatgcttttatgttatctatctatcta 187

                                                                       
Query: 241 tctacctatctatctatctacctacctacctatctaaatttaattaatatctatgttaat 300
           ||||    |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 186 tcta----tctatctacctacctacctacctatctaaatttaattagtatctatgttaat 131

                                                                       
Query: 301 ataaatttaagttgttagttaactactatgattttgactgttggttgcccatccaaa--- 357
           |||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||   
Sbjct: 130 ataaatttaatttgttagttaattcctatgattttgactgttggttgcccatccaaagca 71

                                                                       
Query: 358 --tg-------------tgtgtcctttaggagatggttagaaaattctgccctcatgaat 402
             ||             |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  catgcaatatcgagaagtgtgtcctttaggagatggttagaaaattctgccctcatgaat 11

                  
Query: 403 ggatgtt 409
           |||||||
Sbjct: 10  ggatgtt 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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