BAC Information

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BAC

Clone NameMSMg01-379K23
Chromosome1 (Build37)
Map Location 156,645,899 - 156,833,962
singlet/doubletdoublet
Overlap genenone
Upstream geneRgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
Downstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367, Acbd6, Lhx4, Qscn6, Cep350, LOC676894
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379K23.T7 (MSMg01no379_k23.b1)MSMg01-379K23.TJ (MSMg01no379_k23.g1)
ACCAG484238AG484239
length749761
length of high quality
(start - end)		547 (42 - 588)495 (69 - 563)
definitionCHROMAT_FILE: MSMg01no379_k23.b1 PHD_FILE: MSMg01no379_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:30 2005CHROMAT_FILE: MSMg01no379_k23.g1 PHD_FILE: MSMg01no379_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,833,652 - 156,833,962)(156,645,899 - 156,646,393)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAAGCCCATTGTCTTGCTAAAGACGAACTAGGACTGTTGGAACACTGGC
GGACAGCTTTAGCTATGTCAGAATTCAATCTTAAAAGGCACTTATGATAG
GAAAAAATTGAAAGAGAGCACGTGGATCCATACACTAGACTAACTCGGGA
ATGGAACTCGGGAATGAAAAATTACTGTATGGGTAGCGAACACTAGACTC
CAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCATGAGTGACTTTTAAG
CCTCTCGGCTTGTCCAGTTGACTCGACCGGAGAGCGTAGCATAAGACTTC
AAAGTCCCTCACTCCTGGGGGACATACTTCTTCCAACAAAGCCACACCTA
CTCTAACAAGGCCATACTTCCTAATATTGCTACTTTCTTTGGACCTGGGG
TAGGGCATATTTTTCCAAACCAGCATACTTGGTTACTATGGTGGGCTAGA
AACTGGCTTGTTGGCTTAGAACACAGCCCTTTTGGAGGTGAGGAGGCCAA
ATGTTTGCAGGTCACTGTGCTGTGTGGCCTCTAAGATTCCGGACCAGACA
TCTGACGATGCTGTAGTTTAATGATGACTTACAGTGGTAAGTGTCTCATG
TTGGGAGGGGCCCTCTTGCATCCTTAAAAGCGGCAGAGCTGGATGTGCGG
GTGGGGAATCCGGATCCATTCTACCCAAACAGAAGTTCTCTGCTGACTG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGCAGCAGCATGCCCTCCAGGCCAGCCTAAGT
TAGAACTTCTGTCCAACATGAAAAGAGAAAGAAGAATGCTCTTGAGTGGC
CAGACAGCTTGGTAACTCTCTTTCTGCCCTCCCCTCAGAGAAGAGACTTG
CCCCAAATATGATTATCCAAGGGCAGGGCAGCTGTAATTCCTGAAGAGAA
CATGCCACAGATGGTTCAAGTTGGCATCCGTCCTCCATGGCTTGCAGGGA
TAGACCCAGTTCCTTCTCCCTAAGAGCTTGGTTAAACAGGTTAGTTGGGC
AGTGGAAACCCAAGCTTGATTGACAGAGCTCATTGAGGTTCAGAGTAGCC
TACAAGATGAGCAGAAGGACCACTGCCTGGCTGACCACAGAGACCTCGCT
GGAAAGGGTAGTGGATATAGACACAAATGACTCTCCCACTCCTCCCTGGC
CTCTGGAACCACCCTTTCCCCAGGGCCCGCCCACTCTCCATACTCACTCC
CACTCCTTGCGCCGGGNCTGCGGGGTGCTCTGCATCTTGTGTGCCTCGTG
GGCCCTGATGATGTCCCGCTGCTCGATGAGCCCCCCTCGCCTCCGCTTCA
TGACCTCCGGGGTCACAGGAAGGAAAGGGCTGGAGCCTGCTTCCCCCGTG
TTGGTGGCCCTCCAAGCCGGGGCTTCTGCCTTCCTGTTTGGGGAAAAAAT
TGTTTCAAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_k23.b1 MSMg01no379_k23.b1 CHROMAT_FILE:
MSMg01no379_k23.b1 PHD_FILE: MSMg01no379_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:30 2005
         (547 letters)



>mm_chr1_156833016_156833962
          Length = 947

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Minus

                                                                       
Query: 237 ttgcctcatgagtgacttttaagcctctcggcttgtccagttgactcgaccggagagcgt 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 ttgcctcatgagtgacttttaagcctctcggcttgtccagttgactcgaccggagagcgt 888

                                                                       
Query: 297 agcataagacttcaaagtccctcactcctgggggacatacttcttccaacaaagccacac 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 agcataagacttcaaagtccctcactcctgggggacatacttcttccaacaaagccacac 828

                                                                       
Query: 357 ctactctaacaaggccatacttcctaatattgctactttctttggacctggggtagggca 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 ctactctaacaaggccatacttcctaatattgctactttctttggacctggggtagggca 768

                                                                       
Query: 417 tatttttccaaaccagcatacttggttactatggtgggctagaaactggcttgttggctt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 tatttttccaaaccagcatacttggttactatggtgggctagaaactggcttgttggctt 708

                                                                       
Query: 477 agaacacagcccttttggaggtgaggaggccaaatgtttgcaggtcactgtgctgtgtgg 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 agaacacagcccttttggaggtgaggaggccaaatgtttgcaggtcactgtgctgtgtgg 648

                      
Query: 537 cctctaagatt 547
           |||||||||||
Sbjct: 647 cctctaagatt 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no379_k23.g1 MSMg01no379_k23.g1 CHROMAT_FILE:
MSMg01no379_k23.g1 PHD_FILE: MSMg01no379_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:31 2005
         (495 letters)



>mm_chr1_156645699_156646593
          Length = 895

 Score =  957 bits (495), Expect = 0.0
 Identities = 495/495 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcagcagcatgccctccaggccagcctaagttagaacttctgtccaacatgaaaagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcagcagcatgccctccaggccagcctaagttagaacttctgtccaacatgaaaagaga 260

                                                                       
Query: 61  aagaagaatgctcttgagtggccagacagcttggtaactctctttctgccctcccctcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaagaatgctcttgagtggccagacagcttggtaactctctttctgccctcccctcag 320

                                                                       
Query: 121 agaagagacttgccccaaatatgattatccaagggcagggcagctgtaattcctgaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaagagacttgccccaaatatgattatccaagggcagggcagctgtaattcctgaagag 380

                                                                       
Query: 181 aacatgccacagatggttcaagttggcatccgtcctccatggcttgcagggatagaccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacatgccacagatggttcaagttggcatccgtcctccatggcttgcagggatagaccca 440

                                                                       
Query: 241 gttccttctccctaagagcttggttaaacaggttagttgggcagtggaaacccaagcttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttccttctccctaagagcttggttaaacaggttagttgggcagtggaaacccaagcttg 500

                                                                       
Query: 301 attgacagagctcattgaggttcagagtagcctacaagatgagcagaaggaccactgcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgacagagctcattgaggttcagagtagcctacaagatgagcagaaggaccactgcct 560

                                                                       
Query: 361 ggctgaccacagagacctcgctggaaagggtagtggatatagacacaaatgactctccca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctgaccacagagacctcgctggaaagggtagtggatatagacacaaatgactctccca 620

                                                                       
Query: 421 ctcctccctggcctctggaaccaccctttccccagggcccgcccactctccatactcact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcctccctggcctctggaaccaccctttccccagggcccgcccactctccatactcact 680

                          
Query: 481 cccactccttgcgcc 495
           |||||||||||||||
Sbjct: 681 cccactccttgcgcc 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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