BAC Information

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BAC

Clone NameMSMg01-379O04
Chromosome1 (Build37)
Map Location 87,599,759 - 87,600,171
singlet/doubletsinglet
Overlap geneSp100
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140
Downstream geneA630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379O04.T7 (MSMg01no379_o04.b1)MSMg01-379O04.TJ (MSMg01no379_o04.g1)
ACCAG484391AG484392
length735755
length of high quality
(start - end)		492 (43 - 534)413 (73 - 485)
definitionCHROMAT_FILE: MSMg01no379_o04.b1 PHD_FILE: MSMg01no379_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:45 2005CHROMAT_FILE: MSMg01no379_o04.g1 PHD_FILE: MSMg01no379_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTTGCAATGTTTTGTTTTATTTTGTTTTTTAAGAATTTGCTGTTCTT
TTATTAGAATCAAGTTGCTACAGTCATAAAATGCTGACTCATGGGATAAC
CAAAAAAGAACCTCAAGAAAATGACTGAATTGATATGCAAATGAAAGACT
GGGCTTTGGTCTGCAAGAGCTAAGCAACCTGGATGAGCTGTCTGGAGAGA
AAACAGAGTTCTTTTAGAATTTTTTTCTAGTAGCTACCCAGAGAGAACTG
CTTGGAGAGCAAATACAGGTCTTTTACAATCTTTTTCCTGCAAGAGAGCA
AAAGAGAGCTGTCTCAGGCAGAGGAAACTGTCTCATGCAGAAAGCTGTCT
TGAGCAGAAAGCTATCTTGAGCATACTACAGATCCAAGAGCTATCTACAG
AGAGCTGTCTAGGGAGCCATCTTGAGCAGATTACAAGGCTAATCAGCTTG
TACCCATGACTTGACTTTTAGTCATTTTTTTGGTTGGTGGCGAACACTCT
CCTTCCTCAGAACCCTCTCCAAGCTGATGTTGATCCTTACCAGAACTCAA
GAAGTTAGATACCAATAATCCAAATAATCCAATTAAAAAATGAGGTACAG
AGCTATATATAGAATTTTCTACATAGGAATCTTTGAATGCCTTGACAATC
CCTATATGAAATGCTCAACATTCCTTACCCTTTTA

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTACGCTTGTCTGGAATCTCCGCTCAT
CCCTGTACAAGCAAGCTGCCCTCTTCCCCCAACTCTACCCGCACGAGGAA
GCCTCCAAACAACGGAAAGGCGCCAAGAGTCCAGTTCTGCATTCTTGGCA
GCTGTCGTAACCTCCTCCCCGGATGCTGCCAGCCACCCCAATCCCTGCCT
AAGTGCTCGCTCATATCTTGACCATACTTGGGCACAAGCCCAGCTTATCA
CCCCTCACCTAAAGAGCTATACTTGTCCCCCACCCCCACCTTAACCTGGG
CACATGACTTCCTCAGTTCTCATCATTGGAACTGATGAGCCTGCCTGCCT
GGGAGCAGAATCTAATAAACCTGCGTTTATGTGCTTTTAATGTGGTCTGA
TATGGCCTGTATATCTGTGACACTGACACACACACACACACACACACATA
TTTGACAGAGAGAGAGAGAGACAGATAGAGAGATAGATATAGAGAGATAC
ATATATATTTTTCTCCCTCTCTTCCTTCTTTCTCCTCTCCCCCCTTTTAC
CTTTCCTATTTTTTTCCTTCCCTTCCCCCCTTTTCCATTTCCCCCCCTTA
TTCCTTCCCCCCCCCTTTTTTTTTCTTTTTCCCCACCCTTTTCACCCCCT
TTCCCTTTTCCTCTCTTTTCGCCCTTTTTTTCCCCTTCTTTTTTCCCCCC
TCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_o04.g1 MSMg01no379_o04.g1 CHROMAT_FILE:
MSMg01no379_o04.g1 PHD_FILE: MSMg01no379_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:46 2005
         (413 letters)



>mm_chr1_87599559_87600371
          Length = 813

 Score =  791 bits (409), Expect = 0.0
 Identities = 412/413 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttacgcttgtctggaatctccgctcatccctgtacaagcaagctgccctcttcccccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 cttacgcttgtctggaatctccgctcatccctgtacaagcaagctgccctcttcccccaa 554

                                                                       
Query: 61  ctctacccgcacgaggaagcctccaaacaacggaaaggcgccaagagtccagttctgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ctctacccgcacgaggaagcctccaaacaacggaaaggcgccaagagtccagttctgcat 494

                                                                       
Query: 121 tcttggcagctgtcgtaacctcctccccggatgctgccagccaccccaatccctgcctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tcttggcagctgtcgtaacctcctccccggatgctgccagccaccccaatccctgcctaa 434

                                                                       
Query: 181 gtgctcgctcatatcttgaccatacttgggcacaagcccagcttatcacccctcacctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gtgctcgctcatatcttgaccatacttgggcacaagcccagcttatcacccctcacctaa 374

                                                                       
Query: 241 agagctatacttgtcccccacccccaccttaacctgggcacatgacttcctcagttctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 373 agagctatacttgtcccccacccccaccttaacctgggcacatgacttcctcagttctcg 314

                                                                       
Query: 301 tcattggaactgatgagcctgcctgcctgggagcagaatctaataaacctgcgtttatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tcattggaactgatgagcctgcctgcctgggagcagaatctaataaacctgcgtttatgt 254

                                                                
Query: 361 gcttttaatgtggtctgatatggcctgtatatctgtgacactgacacacacac 413
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gcttttaatgtggtctgatatggcctgtatatctgtgacactgacacacacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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