Query= MSMg01no379_p14.b1 MSMg01no379_p14.b1 CHROMAT_FILE:
MSMg01no379_p14.b1 PHD_FILE: MSMg01no379_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:53 2005
(555 letters)
>mm_chr1_100733565_100734518
Length = 954
Score = 980 bits (507), Expect = 0.0
Identities = 540/551 (98%), Gaps = 1/551 (0%)
Strand = Plus / Plus
Query: 5 gaattcactcttacaaccggattcttctacagcaaagctttattgcttcatctgaaggaa 64
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactcagacaaccggattcttctacagcaaagctttattgcttcatctgaaggaa 264
Query: 65 gaccccaaacaaggaaaatggtgctgcttatatacccctccgtgtgacgtgtcagctcct 124
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaccccgaacaaggaaaatggtgctgcttatatacccctccgtgtgacgtgtcagctcct 324
Query: 125 gattagctgctcactcatcaccccactactatgccccgggatgggcagtgacttggcacg 184
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 325 gattagctgctcactcatcaccccaccactacgccccgggatgggcagtgacttggcacg 384
Query: 185 aatttactcttgcacctgtgcacattacttgtttaccaattaggcacagcggaggctcat 244
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatttactcttgcacctgcgcacattacttgtttaccaattaggcacagcggaggctcat 444
Query: 245 gatggcgattgctcacggctctccacactctacaatagtgtttaatgtttccatttaggg 304
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 445 gatggcgattgctcacggctctccacactctacgatagtgtttaatgtctccatttaggg 504
Query: 305 gtaaccattcatataattgactttctaatttgtatcaggatatcccataattgttttgga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtaaccattcatataattgactttctaatttgtatcaggatatcccataattgttttgga 564
Query: 365 agacatcagaaagggattctgctctagaaaaagatagacctcagatttagaaccaatggg 424
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 565 agacatcagaaagggattctgctctagaaaaggatagacctcagatttagaaccaatggg 624
Query: 425 agtgttttatgctatggaagccaaaccttggattttcctctgcaataattttgtatgtgt 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agtgttt-atgctatggaagccaaaccttggattttcctctgcaataattttgtatgtgt 683
Query: 485 agtatttgagcattatagcaccagtatcaagaggctgtccgtttattatttttgcctgca 544
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 684 agtatttgagcattatagcaccagtatcaagaggctgtccatttattatttttgcctgca 743
Query: 545 ttgccccaaaa 555
|||||||||||
Sbjct: 744 ttgccccaaaa 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 954
Length adjustment: 10
Effective length of query: 545
Effective length of database: 944
Effective search space: 514480
Effective search space used: 514480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_p14.g1 MSMg01no379_p14.g1 CHROMAT_FILE:
MSMg01no379_p14.g1 PHD_FILE: MSMg01no379_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:53 2005
(448 letters)
>mm_chr1_100913099_100913946
Length = 848
Score = 828 bits (428), Expect = 0.0
Identities = 443/448 (98%)
Strand = Plus / Minus
Query: 1 caagtgtacaaagaaggtaaaactacacatgtaaatgtcaattagcagcaacaaaataat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 caagtgtacaaagaaggtaaaactacacatgtaaatgtcaattagcagcaacaaaataat 589
Query: 61 caatacagggtcattccaaagccatgtagctgcatggactagtgctacttcctttgacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 caatacagggtcattccaaagccatgtagctgcatggactagtgctacttcctttgacca 529
Query: 121 gcctcttgccccagtgaacagtgtcaatgcaattagcatggagtaaatacttatattggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gcctcttgccccagtgaacagtgtcaatgcaattagcatggagtaaatacttatattggc 469
Query: 181 caagatgatgctcttttctaaaataaatcgtgaatcaaaagaatacattgttgaacgagt 240
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 468 caagatgatgctcttttctaaaataagtcatgaatcaaaagaatacattgttgaacgagt 409
Query: 241 atcaactgtggagtgtaaaattaaaatcttgccaaaaggtcaaaattaattttgaaaaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atcaactgtggagtgtaaaattaaaatcttgccaaaaggtcaaaattaattttgaaaaca 349
Query: 301 ttgtggaacaggaggtttcttataaagaaaactgagaaagcaaactctacatgagtcctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ttgtggaacaggaggtttcttataaagaaaactgagaaagcaaactctacatgagtcctg 289
Query: 361 caaataaaagggaaaatcatgcacctagaggcttctcaactttgctggttacagaacatt 420
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 288 caaataaaagggaaaatcatgtacccagaggcttctcaactttgctggttacagaacatt 229
Query: 421 gatcctggcttcagttgtttgtaaaagt 448
|||||||||||||| |||||||||||||
Sbjct: 228 gatcctggcttcagctgtttgtaaaagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
