GGCCGCTATACGACTCACTATTTTCCAGAGGATCCGCGGAATTCTGTGTA
ATATGAGTTATGTATGCTTGGACATCAAGGGGAGAAAGAATACCACTAAG
AGATAATTTGTTTATATTGATTGAAAAAGTGATTTGAGATCATCAAAATG
GGATCTTGGGACTTCTGCAGTCTACTAGGGCTCCACAGGTATTAAATGTA
GCAAAATTGGTGGGAAGGAAAGGCTCAAGTCACCTTTGCTCACATTAAAC
CACAAATAATTTGAAATGCTTAATTATTACTCATGAGGGTAAAAAAATAT
GTAATTATGACTGGTTGTAAGGTGCAGTCATTCCCTCAGAAGGAAATTAG
AAGCCATCTTTTCTGGATTCAGATATGGATGCTGTTTCTCAATAGCCATG
GGAATTTAGACAAATCACTGAATCCCTTTGTTCCCTTCCACGTAAAGTAA
GTATAGTAACTGTGCCCATTTTATAAGGCTTGCGTAAGAGTAAGTCACTG
CTACATGGTGAACATTTGGAAGAGTGTCTGGAATATAGCAAGTTCTATGA
AGGAGTTAGCTATTCAGTCCCATTGTAACTTCTTACTCTATTATTATTTT
CATAAAACATTCTATTTTTAGTATCCCGAATATATTTTTGGTATAAATAA
ATGATAAGTCCAAAACGAATTGAATAACAGTTCAAATTTTTGGGGTAAAA
AACCTCCTTTTGGGCCTGATGGCCTGTTCCCCGGTCTTTTAAAGGCTAAC
CGTCCTTTTGTAAACAACCGAGATTTCCTTCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACTATGTAGACAGACTGGCTTTGATCTCAGATATCTA
GCTGCCACTGACTCCTGAGTCCTGCAATTAAAGACATGCATTAACATAGA
GGCCAACAGCAAATATTGAATTTCAAATGAGGGGGAAAGATGCTATGCAT
TATTTTTACAATTTAAATATTTCCTATTAATGGGTGTGTGTGTATACATT
TGTACATGCATTCCAAGATATATCAGTGGAAGTCAGAGGACAACTTGAAA
GAGTTGATTTTTTCCTTCTACCTTTGGGTCCTAGGAATATACCTCTGGTC
ATTGTGATTGACAGGGTTTTTATTACCCCAACCTTAGTGCATGTTCTACT
TTACGAAAAAATTGATTCCTTTTGAGAAGTGGGGACTGTTTCTGTCCTTC
TGACGTGAGAATTAAGTTAAATAAGTTCTAGTCAGCACATTCAGAATATT
ATGTTCACAACTGGCCCAAACAGAATATACTTTACATAGTAACAATTAAT
GGGTCGTGTAAAGTGACACATTATTATATGGACCTAAACTAATTTCTAAC
AAGTATCCTCAATTCAGAACGGTGAGGAACAGTATTTGCAGAACCCTCTG
AAAAAAGCCTTTTTCCTTCCCTACCTTCTTGAAAAACAATTATGCCCAGG
AATCCGGGAAAACTCCCCACCAAAATGCTCCTCTTTTTTTGTCACACCCC
TCCCCGCGTCTTCCTCTCC

Query= MSMg01no380_h04.b1 MSMg01no380_h04.b1 CHROMAT_FILE:
MSMg01no380_h04.b1 PHD_FILE: MSMg01no380_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:32 2005
         (496 letters)



>mm_chr1_61871002_61871897
          Length = 896

 Score =  909 bits (470), Expect = 0.0
 Identities = 482/486 (99%)
 Strand = Plus / Plus

                                                                       
Query: 11  gaattctgtgtaatatgagttatgtatgcttggacatcaaggggagaaagaataccacta 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gaattctgtgtaatatgagttatgtatgcttggacatcaaggggagaaagaataccacta 270

                                                                       
Query: 71  agagataatttgtttatattgattgaaaaagtgatttgagatcatcaaaatgggatcttg 130
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 271 agagataatttgtttatattgattgaaaaagtgatttgagatcatcaagatgggatcttg 330

                                                                       
Query: 131 ggacttctgcagtctactagggctccacaggtattaaatgtagcaaaattggtgggaagg 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ggacttctgcagtctactagggctccacaggtattaaatgtagcaaaattggtgggaagg 390

                                                                       
Query: 191 aaaggctcaagtcacctttgctcacattaaaccacaaataatttgaaatgcttaattatt 250
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 391 aaaggctcaagtcacctttgctcacattaatccacaaataatttgaaatgcttaattatt 450

                                                                       
Query: 251 actcatgagggtaaaaaaatatgtaattatgactggttgtaaggtgcagtcattccctca 310
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 actcatgagggtaaaaacatatgtaattatgactggttgtaaggtgcagtcattccctca 510

                                                                       
Query: 311 gaaggaaattagaagccatcttttctggattcagatatggatgctgtttctcaatagcca 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaaggaaattagaagccatcttttctggattcagatatggatgctgtttctcaatagcca 570

                                                                       
Query: 371 tgggaatttagacaaatcactgaatccctttgttcccttccacgtaaagtaagtatagta 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tgggaatttagacaaatcactgaatccctttgttcccttccacgtaaagtaagtatagta 630

                                                                       
Query: 431 actgtgcccattttataaggcttgcgtaagagtaagtcactgctacatggtgaacatttg 490
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 631 actgtgcccattttataaggctagcgtaagagtaagtcactgctacatggtgaacatttg 690

                 
Query: 491 gaagag 496
           ||||||
Sbjct: 691 gaagag 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no380_h04.g1 MSMg01no380_h04.g1 CHROMAT_FILE:
MSMg01no380_h04.g1 PHD_FILE: MSMg01no380_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:32 2005
         (433 letters)



>mm_chr1_62057248_62058080
          Length = 833

 Score =  634 bits (328), Expect = 0.0
 Identities = 331/332 (99%)
 Strand = Plus / Minus

                                                                       
Query: 102 attgaatttcaaatgagggggaaagatgctatgcattatttttacaatttaaatatttcc 161
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 attgaatttcaaatgagggggaaagatgctatgcattatttttacaatttaaatatttcc 774

                                                                       
Query: 162 tattaatgggtgtgtgtgtatacatttgtacatgcattccaagatatatcagtggaagtc 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tattaatgggtgtgtgtgtatacatttgtacatgcattccaagatatatcagtggaagtc 714

                                                                       
Query: 222 agaggacaacttgaaagagttgattttttccttctacctttgggtcctaggaatatacct 281
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 713 agaggacaacttgaaagagttggttttttccttctacctttgggtcctaggaatatacct 654

                                                                       
Query: 282 ctggtcattgtgattgacagggtttttattaccccaaccttagtgcatgttctactttac 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ctggtcattgtgattgacagggtttttattaccccaaccttagtgcatgttctactttac 594

                                                                       
Query: 342 gaaaaaattgattccttttgagaagtggggactgtttctgtccttctgacgtgagaatta 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gaaaaaattgattccttttgagaagtggggactgtttctgtccttctgacgtgagaatta 534

                                           
Query: 402 agttaaataagttctagtcagcacattcagaa 433
           ||||||||||||||||||||||||||||||||
Sbjct: 533 agttaaataagttctagtcagcacattcagaa 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)