BAC Information

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BAC

Clone NameMSMg01-380J08
Chromosome1 (Build37)
Map Location 190,068,766 - 190,069,249
singlet/doubletsinglet
Overlap genenone
Upstream geneGpatch2, Esrrg, 9330162B11Rik
Downstream geneUsh2a, Kctd3, Kcnk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380J08.T7 (MSMg01no380_j08.b1)MSMg01-380J08.TJ (MSMg01no380_j08.g1)
ACCAG484924AG484925
length7581,102
length of high quality
(start - end)
490 (34 - 523)---
definitionCHROMAT_FILE: MSMg01no380_j08.b1 PHD_FILE: MSMg01no380_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:42 2005CHROMAT_FILE: MSMg01no380_j08.g1 PHD_FILE: MSMg01no380_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGATCCGCGGAATTCCACAT
TCTATCGCTTCTACGCCTGCTTCCCCATCTCCCTTCCCCATTCATCTTTC
TGCTTTTTCTTCTGTGATGTTCCCTGACCTTTGAAGGATGTGTTACAGCT
AGCTCAGTTACAGCAGGACAATCAAGTCATTCATTTCTTATATTCTGGAC
ATGTTTGGAAAACTTTTTAACTCCATGTCTTTTTTCCGTGACTTTAGAGC
TCGTTCCTTGTATTATTTTTGTATAGATAACTCTGCTGTGCATCTGCTAT
GGCATAAACATTACATGCTACCAGCATGCGTGGATAGTACTACACATGTT
AGCAGGCATTGTCTCACATGTCTTCCCAGCCACTCAGGAGGTACTGCTTG
AGTTCTGACTTTACCCAGGAAGAAACAAAAGCTTGTTCAGGGTATGCAGC
TATTGGCTGTATGACGTAATGCCTAAATCCAGACACCTGAATTAATATTT
ATACACGGTAAATTCCTCCCCTGTACATGTACAATATGCTTCCCTAAGAA
TACACAATCTTGTCACCCTTCTTGTTCATAGGGATATAAATGAGATTACA
TTGTCCTTTCTCACCCATTCTCTGTCTACATCTTTGCCCATCCCGCTTCT
AATGACCCTGGATATTTCCTGCTCCATAAATTTGAATTTTCACTACACTA
AAATATTGGCCCTCTATTAGGGACCCTGTCCCTCACTTGGTTTCGTCCCT
TCTCTTTG
TCAGGAGTNATGCGCGCGCTTTTTTACCTTATGTTACTCTCGACCGCCAT
GTTAAGACCTCACCGGGTTTGGTGAATGAAACACTTTATGGATATGTACC
AGAATTGTAAACCAATCAAGTAGAAGAGGAGTTCCTCGCAGCTCCCCCGC
GTTCATTACCCGCTAAACCGTTCGCGTATTGGCTTTACTCCCCCCCACAT
TAGCCCCGAGTGGCTTCATCTGTCAGATTCCCCGACATCCCTCGCGCGCT
TTTTAATCCTCGTTCCCCGCCCACCTAGTATATTGCGTCCCCCAAATTAA
TACCATGCCAAAATATTTATAACACTCACATCGCCACCAACCACCCATCA
TAAACTCGCCCCGCACCTGTAACAAACAGAGACGCCGCCGAGGCGCAGCC
ACCTATCTCCGCGGCAACCCAAGGACCACATCAACCTTACTTTCCATCCC
CCTTTACTTAGAGATAAGCGCGGGAACGGAGGGCGGAGGAAGGTGAGGAA
CGAAGAGGAAAAAGAGAGGATGAGGATTGGGAGGGGGATATTATTAGATA
GCACACATTACCTTCACATGTTGAAATATGGACCTGCAGCGAGTTTAATA
CTGTTCGGCGGCCCTCCGCGTTTTTATTCTCAGCATGAAATCCTATAAGA
CTGACGTCTCCAAATTCCCACTGGCGGCACCATCCTGTACGCCCCCATAC
GTGGAGTACCCGCCGCACCAATATGAAGTAGTATCTTGTAAGGGGGAGTC
AGCCCACTAATATCGCCGCCGTTACATAGTGAATATTGTTGTGTTTATAG
AAGTTCTCCTCTCCCCCGCGTATCGCCTTCTAAGTAAGTATGTGAACGCC
AGATGCGATGGCCGCCACGCCACACATTACTCCCCCAGTTAGTATAGTCC
CACAGCCACTCCCATCTTGTCTACACGCTTATGACATCGCTTGCGCGAAC
CCTTTGAGTGACGCCCGCTTGATATCGCGCTATTTGCTCCTTATCGCTGA
TGCCTTTTATTATGCAGAAAGACATCTCTACCATTTCCACACCGACACCC
CGTTTTACTAGATTACCGCTTACACCCTCACCTCAATTAACCCCACCCCA
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_j08.b1 MSMg01no380_j08.b1 CHROMAT_FILE:
MSMg01no380_j08.b1 PHD_FILE: MSMg01no380_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:42 2005
         (490 letters)



>mm_chr1_190068560_190069449
          Length = 890

 Score =  814 bits (421), Expect = 0.0
 Identities = 469/485 (96%), Gaps = 1/485 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattccacattctatcgcttctacgcctgcttccccatctcccttccccattcatctt 65
           |||||||||||||| | |||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 207 ggaattccacattcca-cgcttctacgcccgctttcccatctcccttccccattcatctt 265

                                                                       
Query: 66  tctgctttttcttctgtgatgttccctgacctttgaaggatgtgttacagctagctcagt 125
           |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
Sbjct: 266 tctgctttttcttctgtgatattccctgacctctgaaggatgtgttacagctagctcact 325

                                                                       
Query: 126 tacagcaggacaatcaagtcattcatttcttatattctggacatgtttggaaaacttttt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 326 tacagcaggacaatcaagtcattcatttcttatattctggacatgtttgaaaaacttttt 385

                                                                       
Query: 186 aactccatgtcttttttccgtgactttagagctcgttccttgtattatttttgtatagat 245
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aactccatgtcttttttctgtgactttagagctcgttccttgtattatttttgtatagat 445

                                                                       
Query: 246 aactctgctgtgcatctgctatggcataaacattacatgctaccagcatgcgtggatagt 305
           ||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 446 aaccctgctgtgcatctgctatggcataaacactacatgctaccagcatgcatggatagt 505

                                                                       
Query: 306 actacacatgttagcaggcattgtctcacatgtcttcccagccactcaggaggtactgct 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 actacacatgttagcaggcattgtctcacatgtcttcccagccactcaggaggtactgct 565

                                                                       
Query: 366 tgagttctgactttacccaggaagaaacaaaagcttgttcagggtatgcagctattggct 425
           |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 566 tgagttctgattttacccaggaagaaacaaaagcttgttcaaggtatgcagctattggtt 625

                                                                       
Query: 426 gtatgacgtaatgcctaaatccagacacctgaattaatatttatacacggtaaattcctc 485
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gtatgacataatgcctaaatccagacacctgaattaatatttatacacggtaaattcctc 685

                
Query: 486 ccctg 490
           |||||
Sbjct: 686 ccctg 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)