Query= MSMg01no380_j15.b1 MSMg01no380_j15.b1 CHROMAT_FILE:
MSMg01no380_j15.b1 PHD_FILE: MSMg01no380_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:43 2005
(496 letters)
>mm_chr1_188389938_188390839
Length = 902
Score = 714 bits (369), Expect = 0.0
Identities = 417/441 (94%), Gaps = 18/441 (4%)
Strand = Plus / Minus
Query: 7 cacctcctcccagatcctccacaacttcccactcacccaaatatacacctctctctcttt 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 cacctcctcccagatcctccacaacttcccactcacccaaatatacacctctctctcttt 836
Query: 67 ctcttattagaatacaaaaaggcatctaaaaataataataaaataaaagtgaagtaaaac 126
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 835 ctcttattagaatacaaaaaggcatctaaa---aataataaaataaaagtgaagtaaaac 779
Query: 127 ccatcaaatcagaacagcacaaagtgaactactttgaaga--aa-aag---aaggacaaa 180
||||||| |||||||||||||||||||||||||||||||| || ||| |||||||||
Sbjct: 778 ccatcaagtcagaacagcacaaagtgaactactttgaagaagaagaagaaaaaggacaaa 719
Query: 181 gtggaaagcataagtgccacatacaggtaccgagacacgcatgtctgcctgcccagaaat 240
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 718 gcggaaagcataagtgccacatacaggtaccgagacacgcacgtctgcctgcccagaaat 659
Query: 241 ataat---taataataataacccaacactggaaaccatcatatataagcaagagaaacaa 297
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 658 ataattaataataataataacccaacactggaaaccatcgtatataagcaagagaaacaa 599
Query: 298 aataa------aacatcaacaaccaaacctccaaagagctctcagacaaacctttatgag 351
||||| |||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 598 aataaaacaacaacaacaacaaccaaacctccaaagagctctcagacaaaccttcatgag 539
Query: 352 ctgaggaacccccagacctgctgctgagctcctatgtgtgctgtttgctgggcttgtgtc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ctgaggaacccccagacctgctgctgagctcctatgtgtgctgtttgctgggcttgtgtc 479
Query: 412 tgtccataagagtggtttatc 432
|||||||||||||||||||||
Sbjct: 478 tgtccataagagtggtttatc 458
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 902
Length adjustment: 10
Effective length of query: 486
Effective length of database: 892
Effective search space: 433512
Effective search space used: 433512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_j15.g1 MSMg01no380_j15.g1 CHROMAT_FILE:
MSMg01no380_j15.g1 PHD_FILE: MSMg01no380_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:44 2005
(309 letters)
>mm_chr1_188234456_188235164
Length = 709
Score = 598 bits (309), Expect = e-175
Identities = 309/309 (100%)
Strand = Plus / Plus
Query: 1 atttgaacatgactcctagaatcttctttgtttatagttagttccttccgttgagcagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgaacatgactcctagaatcttctttgtttatagttagttccttccgttgagcagag 260
Query: 61 gtgggatccgaggatccagtgagatccttggatcaggaccatattttgtagggcaaagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgggatccgaggatccagtgagatccttggatcaggaccatattttgtagggcaaagag 320
Query: 121 tatcttctctactccatacaaacaatcaaatctcagtcaagtcctacagagagataccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatcttctctactccatacaaacaatcaaatctcagtcaagtcctacagagagataccag 380
Query: 181 cagtgctgccattcaggtccaaatcttgctggtgcagaggcagggtctagataagatgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtgctgccattcaggtccaaatcttgctggtgcagaggcagggtctagataagatgag 440
Query: 241 tgctatgtcccaatttgatgtctatttgtcagttaaaaaacattgtaggaatagggatgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctatgtcccaatttgatgtctatttgtcagttaaaaaacattgtaggaatagggatgt 500
Query: 301 ggcttcacc 309
|||||||||
Sbjct: 501 ggcttcacc 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
