XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
ACATTTACCGAGATAATTTGCTATTGTTGGTTGGATTTTTGTAAACATAA
AATATATTTATTTAAAATCAAATATTGCAAAATTAATTTCTTTCTTATTA
TCTTTCAGTCTGCCTATGTCTCCTCCATTGACTTCTCCTTTTGGTATTTG
TAAATTGGCAAAACTAATTACTTGGTCATTTTTTGCCAGATCCTCTTTAC
TCTGAACCCATCTTTCTACTTTCCTCACAAGTAAGTGGGTTACATTCCAA
GGGTGTTGTAACTTCCTATAGAATGAGAAAACAAAACTTACAGTGTAAAA
TGTGCATGGAAAGCTATACAGAAAATACTAAATAATTTCAAGATGATCTC
AGTATATAAATGAATATGTCTGAGAATTTACTCCTACATTGCATTCAAGG
CCCAGCATTAAACATCAAAAGAACAGATGGTTTCTTAAGTCTCAATATGA
AGGACTGAAATCTACTTTGCCTAGCTTAAAAGTGTCCCTAAGTTTTCTGT
GTATTGCTTTGAATATATGACTTCATTAACACATAAAAACTGAGGATTTG
ACTCAGAACTCAACACCCCTCATGTTATAGGAATGAGAAGATAGAGAAAA
CTGTTAAAATTGAGAATGGTGGTGGATGCCCTTGACATTGGAGAGTTGGA
AAATACCGTCATGGATGCCAAATGGGACCTGAGGGAAGTGCT

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATGAAATTCTTGCTCAAGAAGAAGGAAGAC
CAAAATGTGGGTACTTCAGTACTTCTTAGAAGGGGGAACAAAATACTCAT
GGAGGAAATATGGAGACAAAATGTGGAGCAGATACTGAAAGGCTATCCAG
AGACTGCCCTACCTGAGGATTCATCCTATATACAGACACTTGAAGATACC
AAGAAGTATTTGCTGACAGAAGTCTGATATAAGTGTCTCACAGTCATCTA
TAGGACGGAACATAGGGCCCCCAAAGTAGGAGCTAGAGAAAGTACCCAAG
AGCTGAAGGGGTCTGCAACCCTATAGGTGTAACAACAATATGAACTAATC
AGTAACCCCAGAGCTCGTGTCTCTAGAAGCATATGTAGCAGAAGTTGGCC
TAGTCGGCCATCATTGGGAAGAGAGGCCCCTTGGTCTGGCAAACTTTATA
TGCCCTGGTACAGGGAAACGCCAGGGCCAAGAAGTGGGGGTTGGTGGGTT
GNNGAGCAGGNNAGGGAGAGAGTATAGGGTAATTTTGGGATANTTTTTGT
TTTGTNNTTGTTTATATTATTAAAGGTGTTTATTTGTTTTTGTTTGTTGA
ATGGAGGTNATATTTTGTTTTTTAATAAGAAAAGGGAAAATAATATTATT
TGTATTGTTTTCGGTTATTTTTGTTTTGTTATTACTAATATACG

Query= MSMg01no380_j17.b1 MSMg01no380_j17.b1 CHROMAT_FILE:
MSMg01no380_j17.b1 PHD_FILE: MSMg01no380_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:44 2005
         (585 letters)



>mm_chr1_80847432_80848416
          Length = 985

 Score = 1085 bits (561), Expect = 0.0
 Identities = 576/581 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacatttaccgagataatttgctattgttggttggatttttgtaaacataaaat 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacatttactgagataatttgctattgttggttggatttttgtaaacataaaat 264

                                                                       
Query: 65  atatttatttaaaatcaaatattgcaaaattaatttctttcttattatctttcagtctgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atatttatttaaaatcaaatattgcaaaattaatttctttcttattatctttcagtctgc 324

                                                                       
Query: 125 ctatgtctcctccattgacttctccttttggtatttgtaaattggcaaaactaattactt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctatgtctcctccattgacttctccttttggtatttgtaaattggcaaaactaattactt 384

                                                                       
Query: 185 ggtcattttttgccagatcctctttactctgaacccatctttctactttcctcacaagta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtcattttttgccagatcctctttactctgaacccatctttctactttcctcacaagta 444

                                                                       
Query: 245 agtgggttacattccaagggtgttgtaacttcctatagaatgagaaaacaaaacttacag 304
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtgggttacattccaaggatgttgtaacttcctatagaatgagaaaacaaaacttacag 504

                                                                       
Query: 305 tgtaaaatgtgcatggaaagctatacagaaaatactaaataatttcaagatgatctcagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtaaaatgtgcatggaaagctatacagaaaatactaaataatttcaagatgatctcagt 564

                                                                       
Query: 365 atataaatgaatatgtctgagaatttactcctacattgcattcaaggcccagcattaaac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atataaatgaatatgtctgagaatttactcctacattgcattcaaggcccagcattaaac 624

                                                                       
Query: 425 atcaaaagaacagatggtttcttaagtctcaatatgaaggactgaaatctactttgccta 484
           |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 625 atcaaaagaacagatggtttcttaagtctcaacatgaaggactgaaacctactttgccta 684

                                                                       
Query: 485 gcttaaaagtgtccctaagttttctgtgtattgctttgaatatatgacttcattaacaca 544
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcttaaaagtgtccctatgttttctgtgtattgctttgaatatatgacttcattaacaca 744

                                                    
Query: 545 taaaaactgaggatttgactcagaactcaacacccctcatg 585
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 taaaaactgaggatttgactcagaactcaacacccctcatg 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)