BAC Information

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BAC

Clone NameMSMg01-380J21
Chromosome1 (Build37)
Map Location 65,682,248 - 65,871,678
singlet/doubletdoublet
Overlap genenone
Upstream geneCcnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380J21.T7 (MSMg01no380_j21.b1)MSMg01-380J21.TJ (MSMg01no380_j21.g1)
ACCAG484950AG484951
length730748
length of high quality
(start - end)		380 (68 - 447)547 (71 - 617)
definitionCHROMAT_FILE: MSMg01no380_j21.b1 PHD_FILE: MSMg01no380_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:45 2005CHROMAT_FILE: MSMg01no380_j21.g1 PHD_FILE: MSMg01no380_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,682,248 - 65,682,627)(65,871,132 - 65,871,678)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTACAGAATCCGCGGAATTC
AGCATTTGTCACATACACATATCTTAGAATCTACAGTGGTTAAACACAAA
CTTCTCATTTCTAATTGTTGGGAAATAAAGGCAGTATGGCAAGCCCACAC
CCTATACATCCAGGGGCTGTGCAAACATTAAATATCTGGCTTCAGGTGCA
TACTTTTGAGTAGCATATATGTAGACCATTTCTGTTCCTATTGTTCAGTG
ATCTGAAACCAAGTTGTTCCTGCAGTCCTTTCCCGCTGCTTTGTGATGCC
AGCTCATTTCAGTGCTGCAATGAAAGCCTAGATAAATTTAGAGGTTTTTT
TTTTAATATAAATGTTTTAAATTGTTAATCGTTGCAGGTTCAAGAGATTT
ATATAAAGCTGCTTTAAAGGTTGCTACCTTTCATTTCCTATTGGAGTCGA
AGCCTGTGGACTTTTCTATCAAATATACCGAGGGGACACATGTGATACAT
GGTAAGAAAGCTGGAGAAGATTGAATGTTTAGAGCGGATGATACCCATCC
TGCGCTAGCCAAATGAACATTTGTTGTGGCAAATATTTAAAATCAATTTG
GTGCTCTCTACTCCACCCCAGATCTTTCAGTTCCCAGATACGAGAAACCA
AACTTTTATACCCCTAGTAAGCCTAATAGCACCTACACTGGGCATATATC
ACTTCCCCATGCCATTTTGTCTACTTCCTT

CATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTAAACAAATGTGAATACAGAAACAAGAC
AACTTGTTAGGATAGCTGATTCCAGTATATCTGGGCCAGAAATTTACAGT
TATGTCAGAAATGGCTTAATTCTCAAAAACTAAGGCTGTTCTGGAAGATA
CCCAAAATGGTCTGAAAAAGAGCTAATTGGAAATAGAGAAGCCAGTAATT
CTATAGAGGAAATATATCACGTGTGCTTAAAGCCCACAAATCACAAAGAG
CTGAATCAAATATTCATTGTCACCTTTAAACAGCTGAAGAGTAGACTTGT
TACTTTGAAAATTAAGATAGGCAGCAGTGAGCACAGGCATTCTCCTTGCT
TTTCCTGTTCACACAGTGCTCAGGGATAGTTGGTACAAGCTTTTATTTTT
AACTATGTATGGGAAAGAATGGATACAATTTGGATATGTCACCTTACAGG
GACAAAGGAAACATAGATCTAGGCTCATTGATTACTAAGAAAAAATGACA
AAGGAATTCATCATAGATTGGCCAAGCTTATAACATCCAACACAATGTCA
ATCATAGCACTTATAAAGATAGCTGTGTTGGGTATGAAATAATACTTGTT
GGAAGTATACAACACTGCCTACAAAATAGTAATGCAAAGAGTAACACTGG
ATTCTAGACAAACCTCTACATTGATCATTGTTCACTAAAATCTTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_j21.b1 MSMg01no380_j21.b1 CHROMAT_FILE:
MSMg01no380_j21.b1 PHD_FILE: MSMg01no380_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:45 2005
         (380 letters)



>mm_chr1_65682048_65682827
          Length = 780

 Score =  727 bits (376), Expect = 0.0
 Identities = 379/380 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catatcttagaatctacagtggttaaacacaaacttctcatttctaattgttgggaaata 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catatcttaaaatctacagtggttaaacacaaacttctcatttctaattgttgggaaata 260

                                                                       
Query: 61  aaggcagtatggcaagcccacaccctatacatccaggggctgtgcaaacattaaatatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggcagtatggcaagcccacaccctatacatccaggggctgtgcaaacattaaatatct 320

                                                                       
Query: 121 ggcttcaggtgcatacttttgagtagcatatatgtagaccatttctgttcctattgttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcttcaggtgcatacttttgagtagcatatatgtagaccatttctgttcctattgttca 380

                                                                       
Query: 181 gtgatctgaaaccaagttgttcctgcagtcctttcccgctgctttgtgatgccagctcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgatctgaaaccaagttgttcctgcagtcctttcccgctgctttgtgatgccagctcat 440

                                                                       
Query: 241 ttcagtgctgcaatgaaagcctagataaatttagaggttttttttttaatataaatgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcagtgctgcaatgaaagcctagataaatttagaggttttttttttaatataaatgttt 500

                                                                       
Query: 301 taaattgttaatcgttgcaggttcaagagatttatataaagctgctttaaaggttgctac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaattgttaatcgttgcaggttcaagagatttatataaagctgctttaaaggttgctac 560

                               
Query: 361 ctttcatttcctattggagt 380
           ||||||||||||||||||||
Sbjct: 561 ctttcatttcctattggagt 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no380_j21.g1 MSMg01no380_j21.g1 CHROMAT_FILE:
MSMg01no380_j21.g1 PHD_FILE: MSMg01no380_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:45 2005
         (547 letters)



>mm_chr1_65870932_65871878
          Length = 947

 Score = 1058 bits (547), Expect = 0.0
 Identities = 547/547 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaaacaaatgtgaatacagaaacaagacaacttgttaggatagctgattccagtatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tttaaacaaatgtgaatacagaaacaagacaacttgttaggatagctgattccagtatat 688

                                                                       
Query: 61  ctgggccagaaatttacagttatgtcagaaatggcttaattctcaaaaactaaggctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ctgggccagaaatttacagttatgtcagaaatggcttaattctcaaaaactaaggctgtt 628

                                                                       
Query: 121 ctggaagatacccaaaatggtctgaaaaagagctaattggaaatagagaagccagtaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ctggaagatacccaaaatggtctgaaaaagagctaattggaaatagagaagccagtaatt 568

                                                                       
Query: 181 ctatagaggaaatatatcacgtgtgcttaaagcccacaaatcacaaagagctgaatcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctatagaggaaatatatcacgtgtgcttaaagcccacaaatcacaaagagctgaatcaaa 508

                                                                       
Query: 241 tattcattgtcacctttaaacagctgaagagtagacttgttactttgaaaattaagatag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tattcattgtcacctttaaacagctgaagagtagacttgttactttgaaaattaagatag 448

                                                                       
Query: 301 gcagcagtgagcacaggcattctccttgcttttcctgttcacacagtgctcagggatagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gcagcagtgagcacaggcattctccttgcttttcctgttcacacagtgctcagggatagt 388

                                                                       
Query: 361 tggtacaagcttttatttttaactatgtatgggaaagaatggatacaatttggatatgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tggtacaagcttttatttttaactatgtatgggaaagaatggatacaatttggatatgtc 328

                                                                       
Query: 421 accttacagggacaaaggaaacatagatctaggctcattgattactaagaaaaaatgaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 accttacagggacaaaggaaacatagatctaggctcattgattactaagaaaaaatgaca 268

                                                                       
Query: 481 aaggaattcatcatagattggccaagcttataacatccaacacaatgtcaatcatagcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaggaattcatcatagattggccaagcttataacatccaacacaatgtcaatcatagcac 208

                  
Query: 541 ttataaa 547
           |||||||
Sbjct: 207 ttataaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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