ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTCTGTTGACTACCTGGCCTCAAGCTAAGAAATCTACCTGCCTCTTCC
TCTTGAGCCTGGACTTAAAGGCATGTACCTGCACCACACTACTTTCTCCT
GTATTTTTTTTTTGACCTGATATTCCAGCCCTTTTGTTGCCCATAAAGGA
CAACATGGTTTAAACCAAATTAGTATTTCTTTTTGTTTTATTTTGTGTAA
TAAATACAACTAACAATTTAACAGGAACAATACATGGTTTAGGAAATCAA
TCAGTACCAACAAAGAAACTAAATATTATGTCTACTTGTTGAGGTTGTCT
TTTGAAGTACAGTCAATAAATGATATTTTCTGAATACCCATGCCTTACTA
AAGTCCATGTAAGGAATTCATCAATTGCATCTCAACTTAGAAACTGAGGA
CAGAGTTTGAAGGAAGTGCTTATGATTCTTTGCTGCTCTTTGTCATACAG
TGGGATTTCTGTTGTAGCTCATTCGATTATTTTTATTTATACTCTATTTT
GTACTCTGTCTTTTAAGGATTAAGTGAAACTAATTAAATTTGGTTAATGT
TGAACATAAGGATTGCAGAGCCACTTATTTCATTATCTGTTATAAAACAA
TATGAACATAATTTATTTTTTCATGTTGCTATTAATCACATGGGTATTAA
CTACTGGTATTACNACTAATTACACTAGCAAG

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAACAATTTCATCATGACTGGTATGGT
TGAGTGTAGAAGAGACTCTACAGATGATTTTTCCTAAAGTATAATTCCTG
CATTCTAAATTCTTATCATTTCACCAACATGTAATTGTAGCTCTCATTCA
TCGAAGATGCTTCTTTTTGCACCAGAGACCATTTTATATATCCACAACTC
TAAAATGCAGACAATTGGCTGTGAATTTCACTTGATACTTTTACAACACC
AGCACTACAAAGAAGACCCAGAGAATATTGTAGATGAGGGTGATTAACTT
CTAAGATTCAGAAGGTGAGGGCATAGTCTGTGAGGTAGTGTCATCTATGC
ATGATAGGAAAAGTGTACCCATAAAATCTCAAAAATATGGTTGCCTATGC
AAGACCCGCATAATGTCAATGTCAGTAACACAAGTTGACATGCTATTATG
GGTGGGGGAATTTTCACAAGACTAAAATCCTAGAAAAATTGTTAAAGGTA
ATGGCTGCTGAGAGATAGATTGACAGACTCTCCAAGGATTAAACCCTCAA
GGATTACCTGTTTCCCAGTGATCAGCCGCAAGGAAATACATGTATGAACA
ACACTAAATGCATGCAAAGGCTATATAAATATGGTTTTTGTGGGNGTTAA
TGGGNGTTTGTGNACCTAATAGGGATAAAACAAACTTAAGAAAAGGCCCT
GAAT

Query= MSMg01no380_k22.b1 MSMg01no380_k22.b1 CHROMAT_FILE:
MSMg01no380_k22.b1 PHD_FILE: MSMg01no380_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:49 2005
         (568 letters)



>mm_chr1_68553666_68554633
          Length = 968

 Score = 1093 bits (565), Expect = 0.0
 Identities = 565/565 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctgttgactacctggcctcaagctaagaaatctacctgcctcttcctctt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ggaattcactctgttgactacctggcctcaagctaagaaatctacctgcctcttcctctt 804

                                                                       
Query: 64  gagcctggacttaaaggcatgtacctgcaccacactactttctcctgtattttttttttg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gagcctggacttaaaggcatgtacctgcaccacactactttctcctgtattttttttttg 744

                                                                       
Query: 124 acctgatattccagcccttttgttgcccataaaggacaacatggtttaaaccaaattagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 acctgatattccagcccttttgttgcccataaaggacaacatggtttaaaccaaattagt 684

                                                                       
Query: 184 atttctttttgttttattttgtgtaataaatacaactaacaatttaacaggaacaataca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atttctttttgttttattttgtgtaataaatacaactaacaatttaacaggaacaataca 624

                                                                       
Query: 244 tggtttaggaaatcaatcagtaccaacaaagaaactaaatattatgtctacttgttgagg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tggtttaggaaatcaatcagtaccaacaaagaaactaaatattatgtctacttgttgagg 564

                                                                       
Query: 304 ttgtcttttgaagtacagtcaataaatgatattttctgaatacccatgccttactaaagt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttgtcttttgaagtacagtcaataaatgatattttctgaatacccatgccttactaaagt 504

                                                                       
Query: 364 ccatgtaaggaattcatcaattgcatctcaacttagaaactgaggacagagtttgaagga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ccatgtaaggaattcatcaattgcatctcaacttagaaactgaggacagagtttgaagga 444

                                                                       
Query: 424 agtgcttatgattctttgctgctctttgtcatacagtgggatttctgttgtagctcattc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agtgcttatgattctttgctgctctttgtcatacagtgggatttctgttgtagctcattc 384

                                                                       
Query: 484 gattatttttatttatactctattttgtactctgtcttttaaggattaagtgaaactaat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gattatttttatttatactctattttgtactctgtcttttaaggattaagtgaaactaat 324

                                    
Query: 544 taaatttggttaatgttgaacataa 568
           |||||||||||||||||||||||||
Sbjct: 323 taaatttggttaatgttgaacataa 299


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)