Query= MSMg01no381_c02.b1 MSMg01no381_c02.b1 CHROMAT_FILE:
MSMg01no381_c02.b1 PHD_FILE: MSMg01no381_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:26 2005
(622 letters)
>mm_chr1_139892904_139893923
Length = 1020
Score = 1160 bits (600), Expect = 0.0
Identities = 613/618 (99%), Gaps = 2/618 (0%)
Strand = Plus / Plus
Query: 5 gaattcagaactgtcacatctgaattctgccaattcaaggactgagaagtttttttctaa 64
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 gaattcagaactgtcacatctgaattctgccaattcaaggactgggaagtttttttctaa 264
Query: 65 tctttcctctttttaagttgattatctcaaatactatatgttacagcaacatgaatctga 124
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 tctttcctctttttaagttgattatctcaaatactat--gttacagcaacatgaatctga 322
Query: 125 ctaaccaacattaaaaacaattttatcttaggccttaaagtttaaatggtgcaacaaaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctaaccaacattaaaaacaattttatcttaggccttaaagtttaaatggtgcaacaaaac 382
Query: 185 ctaatatttctctttctttgttagtagctttattttctttataacccactaagttttcat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctaatatttctctttctttgttagtagctttattttctttataacccactaagttttcat 442
Query: 245 ttgaaataaattaaacagctgagggtctgaaataatctactgagcttataagaaggtcta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttgaaataaattaaacagctgagggtctgaaataatctactgagcttataagaaggtcta 502
Query: 305 gttgaaagccagaggctgaacatcacacacagagatggtggtgaagaagactaccttgaa 364
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gtcgaaagccagaggctgaacatcacacacagagatggtggtgaagaagactaccttgaa 562
Query: 365 gcctggagtcccctttcgtgctgcagctcagctgtttcttggcatcacttgtagagaagt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gcctggagtcccctttcgtgctgcagctcagctgtttcttggcatcacttgtagagaagt 622
Query: 425 gggtacagaaacttaacccaacgggccacagcagctctcagactgctcccacagccacca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gggtacagaaacttaacccaacgggccacagcagctctcagactgctcccacagccacca 682
Query: 485 tcttgtgatctgcacacactgcctaaaggcctgaagaaacttccctgatcatttttaaaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tcttgtgatctgcacacactgcctaaaggcctgaagaaacttccctgatcatttttaaaa 742
Query: 545 agacagatttctaagctatatatcttgcatgttctttaagatgcttgcattagattgatt 604
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agacagatttcgaagctatatatcttgcatgttctttaagatgcttgcattagattgatt 802
Query: 605 atgcacataacatgtgct 622
||||||||||||||||||
Sbjct: 803 atgcacataacatgtgct 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1020
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1010
Effective search space: 618120
Effective search space used: 618120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_c02.g1 MSMg01no381_c02.g1 CHROMAT_FILE:
MSMg01no381_c02.g1 PHD_FILE: MSMg01no381_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:26 2005
(617 letters)
>mm_chr1_140045378_140046393
Length = 1016
Score = 1147 bits (593), Expect = 0.0
Identities = 611/617 (99%), Gaps = 1/617 (0%)
Strand = Plus / Minus
Query: 1 caaattatgtaggactatagttgttgttgttttgcttgtataagaagtaagaatttccaa 60
|||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||
Sbjct: 816 caaattatgtaggactatagctgttgttgctttgcttctataagaagtaagaatttccaa 757
Query: 61 agggaaatgaagagcacagagaggaaaccagacaactctgcatgaagaacagcagtagaa 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 756 agggaaatgaagagcacagagaggaaaccagtcaactctgcatgaagaacagcagtagaa 697
Query: 121 tcatagtgggctgtggcagagctcactaggggctgggtttgcaagtaccgtagctgaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tcatagtgggctgtggcagagctcactaggggctgggtttgcaagtaccgtagctgaagg 637
Query: 181 ccacgatccacaataggatccattttctaattccacctaaaaacatcagcctcagaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ccacgatccacaataggatccattttctaattccacctaaaaacatcagcctcagaagaa 577
Query: 241 caaggataagacaagaagtggagaggaaaaggaagccctttgggtaaagtggtttcatca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 caaggataagacaagaagtggagaggaaaaggaagccctttgggtaaagtggtttcatca 517
Query: 301 tttatgaaactatttatgaaaataacccccaaaaggtaaatttttacatgtttaatagct 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 516 tttatgaaactatttatgaaaataaccccc-aaaggtaaatttttacatgtttaatagct 458
Query: 361 tctaaaaatgaattaggcagcttgatgagttgcagatccagccgtgtggcagagcacact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tctaaaaatgaattaggcagcttgatgagttgcagatccagccgtgtggcagagcacact 398
Query: 421 ttatgagaacggaaggcagagagcataaaagaaggcactgggtgtcggtgggtgggtgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttatgagaacggaaggcagagagcataaaagaaggcactgggtgtcggtgggtgggtgtg 338
Query: 481 agcctggaagaggctggcagacaaccagagccaagcacatggccagggacagagaagaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 agcctggaagaggctggcagacaaccagagccaagcacatggccagggacagagaagaat 278
Query: 541 cttcagcctcagctctaagaattcgtcactgccaaactctcacatctaccacagtttgaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cttcagcctcagctctaagaattcgtcactgccaaactctcacatctaccacagtttgaa 218
Query: 601 ccttgacaatgagctta 617
|||||| ||||||||||
Sbjct: 217 ccttgataatgagctta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1016
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1006
Effective search space: 610642
Effective search space used: 610642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
