Query= MSMg01no381_h03.b1 MSMg01no381_h03.b1 CHROMAT_FILE:
MSMg01no381_h03.b1 PHD_FILE: MSMg01no381_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:51 2005
(482 letters)
>mm_chr1_109560089_109560970
Length = 882
Score = 868 bits (449), Expect = 0.0
Identities = 470/477 (98%), Gaps = 4/477 (0%)
Strand = Plus / Minus
Query: 5 gaattcaactaaatcttattatttgctatttaagagactttcaataagaaattaaagtct 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaattcaactaaatcttattatttgctatttaagagactttcaataagaaattaaagtcg 620
Query: 65 gggctctttaaagtaagccagtataatacactaaaactttgtgatttgtttttaaagcac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gggctctttaaagtaagccagtataatacactaaaactttgtgatttgtttttaaagcac 560
Query: 125 ttgagattatcatttctgtgtacagcctaatattaaaggccccatgtttcagtcatgaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttgagattatcatttctgtgtacagcctaatattaaaggccccatgtttcagtcatgaat 500
Query: 185 acttctaaattttaaaacagttt-aggctcatgggttaaaaatagatacatacatttact 243
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 499 acttctaaattttaaaaca-tttaaggctcatgggttaaaaatagatacatacatttact 441
Query: 244 tattcaaggaaaagattatagactcaagtttggtcaca-aagctttatattatagatata 302
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct: 440 tattcaaggaaaagattatagactcaagtttggtcacataa-ctttatattatagagata 382
Query: 303 taataaatgatgattatttacagtattacattataatataatgataattaagtcattgta 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taataaatgatgattatttacagtattacattataatataatgataattaagtcattgta 322
Query: 363 aagaaaattaatacccttttgagatttttcctgaatctgcaaccatgctaggtggccact 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaaaattaatacccttttgagatttttcctgaatctgcaaccatgctaggtggccact 262
Query: 423 gtactaatgatatttgaaatagcttctctgctgactatgacaatgtcttccataata 479
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgctaatgatatttgaaatagcttctctgctgactatgacaatgtcttccataata 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_h03.g1 MSMg01no381_h03.g1 CHROMAT_FILE:
MSMg01no381_h03.g1 PHD_FILE: MSMg01no381_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:51 2005
(522 letters)
>mm_chr1_109392204_109393126
Length = 923
Score = 988 bits (511), Expect = 0.0
Identities = 520/523 (99%), Gaps = 1/523 (0%)
Strand = Plus / Plus
Query: 1 atacataactagttttcttagtatccagtaaatgggcatgaagggtggaattatttagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atacataactagttttcttagtatccagtaaatgggcatgaagggtggaattatttagga 260
Query: 61 tttgtccattcttatcttatttgctgtactatccagacaaattcgatataggttacacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgtccattcttatcttatttgctgtactatccagacaaattcgatataggttacacat 320
Query: 121 ttgcatgacttttgatagtagaactcaggtggactttatttactgggtactaggagaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcatgacttttgatagtagaactcaggtggactttatttactgggtactaggagaata 380
Query: 181 gacatgaaaaaataaggaatagaaatattgaggcaaagaaagaagagaataacctctgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacatgaaaaaataaggaatagaaatattgaggcaaagaaagaagagaataacctctgac 440
Query: 241 ttcagaggcacaaaagtgccaattgttccaacttatggtccaaattactcatggtaatta 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 ttcagaggcacaaaagtgccaattgttccaacttacggtccaaattactcatggtaatta 500
Query: 301 atatcttcagtatggtgtgggagcttttttgttccactgtcagattcacaagggtcataa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatcttcagtatggtgtgggagcttttttgttccactgtcagattcacaagggtcataa 560
Query: 361 tattgcttcaagtatcactttagcaaatatcaaaactacagttatttctgctgatgagtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattgcttcaagtatcactttagcaaatatcaaaactacagttatttctgctgatgagtt 620
Query: 421 tattggaaattgtatctttagacactgcaaactaaatctaaagaaaatgctaataattac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tattggaaattgtatctttagacactgcaaactaaatctaaagaaaatgctaataattac 680
Query: 481 ttcagtatgaaattttttt-ctatctgtacataccaaatttaa 522
||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 681 ttcagtatgaaattttttttctatctgtacatacaaaatttaa 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 923
Length adjustment: 10
Effective length of query: 512
Effective length of database: 913
Effective search space: 467456
Effective search space used: 467456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
