BAC Information

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BAC

Clone NameMSMg01-381H09
Chromosome1 (Build37)
Map Location 49,075,732 - 49,076,195
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909
Downstream gene2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381H09.T7 (MSMg01no381_h09.b1)MSMg01-381H09.TJ (MSMg01no381_h09.g1)
ACCAG485596AG485597
length735755
length of high quality
(start - end)		474 (37 - 510)465 (76 - 540)
definitionCHROMAT_FILE: MSMg01no381_h09.b1 PHD_FILE: MSMg01no381_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:52 2005CHROMAT_FILE: MSMg01no381_h09.g1 PHD_FILE: MSMg01no381_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATT
GACACTGAACGGCAAAAGTAAACCATCCAAACAATTTTTGGAATAGTGAA
CTGAATAGTTAGCTCTCAAAAGAGGAAATACAAATGTCCAATTAATATTT
TTAAAAGTTTCCAGCATTTTTATTCATCATGTCATGTAGAGTCCATCACA
ACCTAGTAAGAATGATGACCATCTGAAAATCAATTTATACCAAATGTTGG
AAAGAATGTGAAGTAAGGGGAACCCTTACACATTACTACTAGAATGCAAA
TTTACCAAAGCAACACGGGAATCAGTTCAGAGATTCTTCAAATAGAAAAT
CATCCAAAAAGAAAGCAGAATCTCCCCAATCACCCATGTTACAACACCAG
CGAATTTGTAGCTTCGAATGAAGGATAATGGGGTTCATGAACTGAGAAGT
TAGAGCAATTTGTGGAAGTTATACAAGCAATAAGCTATTCTTTGCTATAA
TATTTGGAAAGAAATGTGGNCCTACTGATACTTAGATTTTCAGCTCAGGG
ATTCTTATACCAAGTTTCAGAATAACATAAAGTTAAAGAATGTAACAGGT
TTGCCTAAACCACTATATTTTTGCAATTTTAGGAGACCATGGAAAAGTTT
GTTTGGGGCCCCAATCATGCCTTAATTCCCCTTAATCCCATGGGAGAAGG
AATCTCTACAGAACCTCTCCGTTTTTTGATAAAGN

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTACAAATACAATGTTATTCAGA
GTTATTTTACATTTTGTAATCATTTTATTTTTTTTCCTTTAAATTTTTTG
TTCCTGTCTGAAAGAACTGCAGGGATGGAAATGGAGAGAAGCGTAGGAGA
AGAAGGTCCAGCAGTGGGCCCAAAATGGGATGCAGATTATGGGGAGGCCC
CAAGCCCTGACACTTATTACTGAAGCAATGGAGTACACACAAAAAGGAAC
CTATTGTGATTGCCACCCAAAAGATCCAACAAGCACCTGAAAGAGTCAGA
TTCATATATTTGCAAACAACCAATGGGCAAAAAGTGATAAGCCCTGTGGT
TGAATTAGGGGAAAACTGGAAGATACTGAGTAGGAAAGCAACCCAGTGGT
GGACCAGCATTCCCAATTAACCTGGGCCACGAGATCTCTCAAACACTAGG
CCACCAACCAAGCAGCATATAGTAGGTGATATGAAGCCCCAACACATACA
TAGCAGAGGACTGCCACTCCGGGTTCAGTCAGAGAGATACCTAACCCTCA
AGGGATTGGAGGGCCCCGTGGAGTTTATAGGATGATGGGGAAAGGGGTTT
GGTTATGGGGNACATCCCCCGGATACTAAAGGGAGGGAAAGAATTGTTCC
TGTGGGAACATTTCCAGGGGGGGCCCCCGGGGAAAAAAATCCGCGGGCGT
CTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_h09.b1 MSMg01no381_h09.b1 CHROMAT_FILE:
MSMg01no381_h09.b1 PHD_FILE: MSMg01no381_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:52 2005
         (474 letters)



>mm_chr1_49075523_49076395
          Length = 873

 Score =  837 bits (433), Expect = 0.0
 Identities = 457/465 (98%), Gaps = 1/465 (0%)
 Strand = Plus / Plus

                                                                       
Query: 10  ccattgacactgaacggcaaaagtaaaccatccaaacaatttttggaatagtgaactgaa 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ccattgacactgaacggcaaaagtaaaccatccaaacaatttttggaatagtgaactgaa 269

                                                                       
Query: 70  tagttagctctcaaaagaggaaatacaaatgtccaattaatatttttaaaagtttccagc 129
           ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 270 tagttagctctcaaaagaggaaagacaaatgtccaatgaatatttttaaaagtttccagc 329

                                                                       
Query: 130 atttttattcatcatgtcatgtagagtccatcacaacctagtaagaatgatgaccatctg 189
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gtttttattcatcatgtcatgtagagtccatcacaacctagtaagaatgatgaccatctg 389

                                                                       
Query: 190 aaaatcaatttataccaaatgttggaaagaatgtgaagtaaggggaacccttacacatta 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aaaatcaatttataccaaatgttggaaagaatgtgaagtaaggggaacccttacacatta 449

                                                                       
Query: 250 ctactagaatgcaaatttaccaaagcaacacgggaatcagttcagagattcttcaaatag 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ctactagaatgcaaatttaccaaagcaacacgggaatcagttcagagattcttcaaatag 509

                                                                       
Query: 310 aaaatcatccaaaaagaaagcagaatctccccaatcacccatgttacaacaccagcgaat 369
           ||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 510 aaaatcatccaaaaa-aaagcagaatctccccaatcacccatattacaacatcagcgaat 568

                                                                       
Query: 370 ttgtagcttcgaatgaaggataatggggttcatgaactgagaagttagagcaatttgtgg 429
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttgtagcttcgaatgaaggataacggggttcatgaactgagaagttagagcaatttgtgg 628

                                                        
Query: 430 aagttatacaagcaataagctattctttgctataatatttggaaa 474
           |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 629 aagttatacaagcaataagctattctttcctataatatttggaaa 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 873
Length adjustment: 10
Effective length of query: 464
Effective length of database: 863
Effective search space:   400432
Effective search space used:   400432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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