BAC Information

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BAC

Clone NameMSMg01-381H16
Chromosome1 (Build37)
Map Location 170,673,568 - 170,674,061
singlet/doubletsinglet
Overlap genenone
Upstream geneLmx1a, LOC100039879, Pbx1
Downstream geneEG383613, Nuf2, Rgs5, Rgs4
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381H16.T7 (MSMg01no381_h16.b1)MSMg01-381H16.TJ (MSMg01no381_h16.g1)
ACCAG485610AG485611
length7341,554
length of high quality
(start - end)
498 (36 - 533)---
definitionCHROMAT_FILE: MSMg01no381_h16.b1 PHD_FILE: MSMg01no381_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:54 2005CHROMAT_FILE: MSMg01no381_h16.g1 PHD_FILE: MSMg01no381_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGTA
TGTATATACCAGACACAAACATTTTGGAAGCCAGATTATTTCATTGTGGA
ATAAATCTATGATCATTTTTTACTCTGCTATAGCACAAACCAAGATAATG
CCTCTGCTCACTTCTTCATGCTTGTGTAACAGTCCAGAAAGATCATGACC
TTGCAAAGTATCATTAGGCCCAGCTTTCAGGTCTGTTAAACTGCAAGCTA
CAGTTCTCTGCGGCCTCTCCAGGGTCATGCTGCTGTGGGTTTTAAGGGAC
ATTAAGCCAGGACAGTTGGGAATGCCATCTTTGCTAGTCAAGCTGGAAGA
AAGGTCAGTTTTTGGCCACCTGTCTATTCCCATATCCCCTTGTCCACATC
ACAGACTGTGACACCAGCTGCTGAAGCCAGTCTCAACTCACTGCTAAGGA
ATGCTCCCATGTCTTCTGAGCTGGTATGATTCCCAGTGGATATATATAAT
CAAGCTCCAGCAGCTACTAGGACCAGCACTGGTATTACAAGGGGACTTTT
TGATCTGTGATTACTTCTGTTGACCTTTGGCATGACAACTGGTGATGTAA
AAGGTTATACTCCTTGAAGAGGGGGATGAACAAGATGAAAAACCAATTAA
TTCCCCCTTAATTTTCTTAAAATTTCCGAAATTATTGCCTACCTCTTCAC
GATTAATAAACAAAGCCGGCTTTTTTTTACCCAC
CCGTATCGTGCTGCCCTTACGGTGCCGCGTTCGCTCATGTGGTTCCTTAC
TCACACACTCTCGGCGTGGTGTTGCCCCGATCCCGACGAGTGATCGCCTC
GTGTTACATCTTCTTCTTTCTATAGACTGCTCTGCGCCGCCATTCGGTGA
TCATGTCGCACCTCACACATTGGTCGTAAGCACATACGATGACGNTATGC
GCGCGATATACTACTACTGATCGCGTGCGTGACCTCGCTGACGCACATTG
TNAGCAGTGTCTGGCATTAACGTGCAAGTCATTCGCCTGGTGCTTATGTG
TGGTAGGGCACCGTGTGTGTGAAACGAGCATGCGATAGCANATCGATCCG
CGTGACTATAGCGTGTGTCGAGTANTTAGCGTTCACTAGATGGACTACTG
CTGAGTGTGCAGCGTATGTTGTATCTCCCGGTGCACTCGCACCTGTCAAT
GTATTGTGTGTGTCGATGAGCAGGACGCATNTTACGCGATGAACTATCAT
AGTCGTGGTGTAGAGTCTCGACTAGCACTCTATACTGGTATAAGCGCGAT
GTCTATAGTGCTGGTGACTAAGTCGCTATGAGACGCCGGCTCTCGTGCGG
TTCGCGTGAGCTACGCGCGGTGNATATGACATCCGCAACGCGCTGGTGCG
TCCGGCTCGCTACTTCGATTCCTCTCTACATGTGTCGCGCGAGGCGTATA
TATACATCAACCGCGTGTGAGGCTCTCTGTAGGTATTGCGTACGCTCGTT
ATCAGAACGAGTGATTGCANAATCGGTGCGGCTAANAGTACAGCGCGCTA
ACGCGCGTGACGTGGTGGCCTCACAGCGCCTNTACATAATCAGCGATGCG
CAGTAGATAGGGTGNTGTACGACTAACTCACCCTATTGTAGACACTATCN
CTATGGCTCATGTGCGAACTCTCACGCTGCTGATGTGCATCCATTATCTG
CATATCCGCGNATCGCGTCACCGGNTGATACGTATATTCNGCGCTACGAC
TTGTAGTACGCATTTCGCGTTAATGTATATCGTCGGNTGTGATTCTCGCN
CGCTACGATGAGCATCCTNGCATGATATGTATNAGATATACTATAGCGAT
ACACACTACTGATATACCGATATCTGAACCACACATCATACANGTAGTCA
CTATTNCGCTAGACTGATGACACGACGCATGAAGTCTCGCTGCAGTTAAT
GTACCGCGCCAATCTGATCGCCATTGGCACGCTCCGCGCTCGATATCTAT
ATATCGCATCGCGCTCGGCGCGACTTCCGANGTCAATGCACGCGATGTAT
GTGCTGACATAACNATGACTCGTCCCGAAATATGACGATGCGGCGACGTT
CGTATCCACATATAGCTTATCTGCACTCGTATATATCATACCGCNGCCTN
ATTAGCTCGACGTTCGCACGCACGTNAGCGCTCGTACTACATATCGAGAT
NGGATNACATTCAGCAGATCAGTACAGTNGACGTAACGTTCACTGTCTCG
NTCGACGCGGTAGCGCTAATGATATGCCGTCGATCACGTGCTCGCACGTC
GTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_h16.b1 MSMg01no381_h16.b1 CHROMAT_FILE:
MSMg01no381_h16.b1 PHD_FILE: MSMg01no381_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:54 2005
         (498 letters)



>mm_chr1_170673364_170674261
          Length = 898

 Score =  955 bits (494), Expect = 0.0
 Identities = 494/494 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagtatgtatataccagacacaaacattttggaagccagattatttcattgtgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gaattccagtatgtatataccagacacaaacattttggaagccagattatttcattgtgg 639

                                                                       
Query: 65  aataaatctatgatcattttttactctgctatagcacaaaccaagataatgcctctgctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 aataaatctatgatcattttttactctgctatagcacaaaccaagataatgcctctgctc 579

                                                                       
Query: 125 acttcttcatgcttgtgtaacagtccagaaagatcatgaccttgcaaagtatcattaggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 acttcttcatgcttgtgtaacagtccagaaagatcatgaccttgcaaagtatcattaggc 519

                                                                       
Query: 185 ccagctttcaggtctgttaaactgcaagctacagttctctgcggcctctccagggtcatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ccagctttcaggtctgttaaactgcaagctacagttctctgcggcctctccagggtcatg 459

                                                                       
Query: 245 ctgctgtgggttttaagggacattaagccaggacagttgggaatgccatctttgctagtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ctgctgtgggttttaagggacattaagccaggacagttgggaatgccatctttgctagtc 399

                                                                       
Query: 305 aagctggaagaaaggtcagtttttggccacctgtctattcccatatccccttgtccacat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aagctggaagaaaggtcagtttttggccacctgtctattcccatatccccttgtccacat 339

                                                                       
Query: 365 cacagactgtgacaccagctgctgaagccagtctcaactcactgctaaggaatgctccca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cacagactgtgacaccagctgctgaagccagtctcaactcactgctaaggaatgctccca 279

                                                                       
Query: 425 tgtcttctgagctggtatgattcccagtggatatatataatcaagctccagcagctacta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tgtcttctgagctggtatgattcccagtggatatatataatcaagctccagcagctacta 219

                         
Query: 485 ggaccagcactggt 498
           ||||||||||||||
Sbjct: 218 ggaccagcactggt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)