BAC Information

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BAC

Clone NameMSMg01-382A07
Chromosome1 (Build37)
Map Location 92,482,413 - 92,675,735
singlet/doubletdoublet
Overlap geneCops8, Col6a3
Upstream geneCentg2, Gbx2, Asb18, Iqca, Cxcr7
Downstream geneMlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382A07.T7 (MSMg01no382_a07.b1)MSMg01-382A07.TJ (MSMg01no382_a07.g1)
ACCAG486021AG486022
length754765
length of high quality
(start - end)		569 (24 - 592)561 (56 - 616)
definitionCHROMAT_FILE: MSMg01no382_a07.b1 PHD_FILE: MSMg01no382_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:37 2005CHROMAT_FILE: MSMg01no382_a07.g1 PHD_FILE: MSMg01no382_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,482,413 - 92,482,971)(92,675,175 - 92,675,735)
sequence
GCTATACGACTCACTATATTCAGAGGATCCGCGGAATTCCTTCTCAGTTC
TCCCCATGTTTCCCCTTTCCCTCATGGTTGCCTTTATCCAAGACAGCAGA
GCTGTGTTTTCCCTGAGCAGTAGCTTGTGAGCTGTTTAACATCTGCATCT
ACCCAGGGGACTCCTCACTCTCACGCTGCTCTACCCAGTGAGTGAGGAGC
CCAGTCACCTGCAGATTCCCCTTAATTTCCCCAATTTGAAAATTCTCCCC
AGAAATTGGGTGAGACCCTACTCTTATTCCAAGCTTGGGCCGGGCCTTCC
ACCACACTTATCTCCCTCAATTCTCCAGACTCATATTTGCCTCAGCAGGA
GGCCCCTTTCATGCTCACCAACTTGGTCTGCCTTGTCCCTCAGCGACATA
TTTTAAAATGTCATTATTACATATTTGAGCATCTTGGCATCTACTTCCTA
GGAAGACCCAGGACAAACCCCTGCTTCCTGTTCCCCTGAGGACTTCCTTT
TGCCAATCTGTTTCACAGAGTAGGGTCTCACCCAATTTCTGGCTCTCGTG
ATTTCTGGGTGCTTTGAGTTATCACTGTGTTTGATGTACCACAATCCCTA
GGCTGCCCGGATGTGTATTGTCTAGGTCTAGATACAGATATGACTAACCA
ACCAAAAGATTTCTATCTGGGAATAAATTGCAAGCTGGAACTGTCATGGA
TGACAGACATATGTCTATGAGGTTTCTTTTTATTTCCGAACCAATAAAAC
TTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCACTGACAGACTATGGTGCCAAGGAAAAGCTGTTGGATTTCCTT
AGCCGGAGGATGACCCAACTTCAGGGAACCATGGGCCTGGGCAATGCCAT
TGAATACACTATAGAGAACATCTTTGAAAGTGCTCCAAACCCACGGGACC
TCAAAATTATGGTGCTGATGTTGACTGGTGACATGCAGAGGCAGCAGCTG
GAGGAGGCCCAGAGAGCCATCCTCCAGGCCAAGTGCAAGGGTTACTTCTT
TGTGGTTCTGGGCATTGGCAGGAAGGTGAATATCAAGGAGGTCTACAGCT
TTGCCAGTGAGCCCAATGATGTCTTCTTCAAATTTGTGGACAAATCAACT
GAGCTCAACGAGGAGCCTCTGATGCGCTTTGGGAGGCTGCTCCCATCCTT
TGTCAGCAGTAAGTCCTGTGCCACACATAGTGTGTTCTGCCTATGGCTTT
ATTCTGGCTCATACTCTCAGGTCACAAGTCTGGGTGAACAGTCATAGAAA
AATACATCTTCGTGCTGATGTGACTTGTTCATTCATCCAACACACACACA
CACACACACACACACACTTACACACTTACACACACACACACACACACAAT
TATACATGTGCCTAAACTGTGTCCTTGAGGTATGAGCTAGAGAGTCAACA
AGGCACACNCGGACACATCCCGTGGTCTTCCTTTGGGCCCCTAATTAAGC
CCCCTTTTACTGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_a07.b1 MSMg01no382_a07.b1 CHROMAT_FILE:
MSMg01no382_a07.b1 PHD_FILE: MSMg01no382_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:37 2005
         (569 letters)



>mm_chr1_92482203_92483171
          Length = 969

 Score = 1073 bits (555), Expect = 0.0
 Identities = 558/559 (99%)
 Strand = Plus / Plus

                                                                       
Query: 11  gaattccttctcagttctccccatgtttcccctttccctcatggttgcctttatccaaga 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gaattccttctcagttctccccatgtttcccctttccctcatggttgcctttatccaaga 270

                                                                       
Query: 71  cagcagagctgtgttttccctgagcagtagcttgtgagctgtttaacatctgcatctacc 130
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 271 cagcagagctgtgttttccctgagcagtagcttgtgagctgtttaacatctgcatctatc 330

                                                                       
Query: 131 caggggactcctcactctcacgctgctctacccagtgagtgaggagcccagtcacctgca 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 caggggactcctcactctcacgctgctctacccagtgagtgaggagcccagtcacctgca 390

                                                                       
Query: 191 gattccccttaatttccccaatttgaaaattctccccagaaattgggtgagaccctactc 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gattccccttaatttccccaatttgaaaattctccccagaaattgggtgagaccctactc 450

                                                                       
Query: 251 ttattccaagcttgggccgggccttccaccacacttatctccctcaattctccagactca 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ttattccaagcttgggccgggccttccaccacacttatctccctcaattctccagactca 510

                                                                       
Query: 311 tatttgcctcagcaggaggcccctttcatgctcaccaacttggtctgccttgtccctcag 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tatttgcctcagcaggaggcccctttcatgctcaccaacttggtctgccttgtccctcag 570

                                                                       
Query: 371 cgacatattttaaaatgtcattattacatatttgagcatcttggcatctacttcctagga 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cgacatattttaaaatgtcattattacatatttgagcatcttggcatctacttcctagga 630

                                                                       
Query: 431 agacccaggacaaacccctgcttcctgttcccctgaggacttccttttgccaatctgttt 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 agacccaggacaaacccctgcttcctgttcccctgaggacttccttttgccaatctgttt 690

                                                                       
Query: 491 cacagagtagggtctcacccaatttctggctctcgtgatttctgggtgctttgagttatc 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 cacagagtagggtctcacccaatttctggctctcgtgatttctgggtgctttgagttatc 750

                              
Query: 551 actgtgtttgatgtaccac 569
           |||||||||||||||||||
Sbjct: 751 actgtgtttgatgtaccac 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no382_a07.g1 MSMg01no382_a07.g1 CHROMAT_FILE:
MSMg01no382_a07.g1 PHD_FILE: MSMg01no382_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:37 2005
         (561 letters)



>mm_chr1_92675002_92675962
          Length = 961

 Score = 1085 bits (561), Expect = 0.0
 Identities = 561/561 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcactgacagactatggtgccaaggaaaagctgttggatttccttagccggaggatgacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tcactgacagactatggtgccaaggaaaagctgttggatttccttagccggaggatgacc 675

                                                                       
Query: 61  caacttcagggaaccatgggcctgggcaatgccattgaatacactatagagaacatcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 caacttcagggaaccatgggcctgggcaatgccattgaatacactatagagaacatcttt 615

                                                                       
Query: 121 gaaagtgctccaaacccacgggacctcaaaattatggtgctgatgttgactggtgacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gaaagtgctccaaacccacgggacctcaaaattatggtgctgatgttgactggtgacatg 555

                                                                       
Query: 181 cagaggcagcagctggaggaggcccagagagccatcctccaggccaagtgcaagggttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cagaggcagcagctggaggaggcccagagagccatcctccaggccaagtgcaagggttac 495

                                                                       
Query: 241 ttctttgtggttctgggcattggcaggaaggtgaatatcaaggaggtctacagctttgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttctttgtggttctgggcattggcaggaaggtgaatatcaaggaggtctacagctttgcc 435

                                                                       
Query: 301 agtgagcccaatgatgtcttcttcaaatttgtggacaaatcaactgagctcaacgaggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agtgagcccaatgatgtcttcttcaaatttgtggacaaatcaactgagctcaacgaggag 375

                                                                       
Query: 361 cctctgatgcgctttgggaggctgctcccatcctttgtcagcagtaagtcctgtgccaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cctctgatgcgctttgggaggctgctcccatcctttgtcagcagtaagtcctgtgccaca 315

                                                                       
Query: 421 catagtgtgttctgcctatggctttattctggctcatactctcaggtcacaagtctgggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 catagtgtgttctgcctatggctttattctggctcatactctcaggtcacaagtctgggt 255

                                                                       
Query: 481 gaacagtcatagaaaaatacatcttcgtgctgatgtgacttgttcattcatccaacacac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gaacagtcatagaaaaatacatcttcgtgctgatgtgacttgttcattcatccaacacac 195

                                
Query: 541 acacacacacacacacacaca 561
           |||||||||||||||||||||
Sbjct: 194 acacacacacacacacacaca 174


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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