Query= MSMg01no382_a23.b1 MSMg01no382_a23.b1 CHROMAT_FILE:
MSMg01no382_a23.b1 PHD_FILE: MSMg01no382_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:40 2005
(552 letters)
>mm_chr1_191038414_191039367
Length = 954
Score = 959 bits (496), Expect = 0.0
Identities = 536/550 (97%), Gaps = 2/550 (0%)
Strand = Plus / Plus
Query: 5 gaattcatttgcagtcagaattcttggcagccccacactatcttttt--cttttttgcat 62
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattcatttgcagtcagaattcttggcagccccacactatctttttttcttttttgcat 264
Query: 63 acccataaacacaaactctgcctttccacaccagaaataggatttgattcttggcacccc 122
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acccataaacacaaactctgtctttccacaccagaaataggatttgattcttggcacccc 324
Query: 123 aaccctaatcccagaaagctaaatctttcaaccttgtcttcattgcaacttgaaaatgaa 182
||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 325 aacccaaatcccagaaagctaaatatttcaactttgtcttcattgcaacttgaaaatgaa 384
Query: 183 ggggtcctaaaggtctggagaaagcagaaaactttccttgggctttacctgaattttctc 242
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 385 ggggtcctgaaggtctggagaaagcagaaaactttccttgggttttacctgaattttctc 444
Query: 243 tcaagaagcagatttcacaaagtcaccaaggcctcgcgggctgctcatggcagagagaac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaagaagcagatttcacaaagtcaccaaggcctcgcgggctgctcatggcagagagaac 504
Query: 303 tctctgcaaagccagagttttgcagccgttaggaaaatggcaactgccaaaaggctttgg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctctgcaaagccagagttttgcagccgttaggaaaatggcaactgccaaaaggctttgg 564
Query: 363 cttgtccaaggtcctgggctgcttgtctcttatcttttagttgtatttgacctctcgcct 422
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttgtccagggtcctgggctgcttgtctcttatcttttagttgtatttgacctctcgcct 624
Query: 423 gggaggttatttcttctcactctgcagagtgtgatttttcctaatttcgatagaatcccc 482
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 625 gggaggttatttcttctcactctgcagagtgtgatttctcctaatttcgatagaatcccc 684
Query: 483 aatggtggacaaacaacttctgtaaggcatctcagctgtgatgtggtaagtcagaaccgg 542
||| ||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 685 aatagtggacaaagaacctctgtaaggcatctcagctgtgatgtggcaagtcagaaccgg 744
Query: 543 gcagggaaat 552
||||||||||
Sbjct: 745 gcagggaaat 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 954
Length adjustment: 10
Effective length of query: 542
Effective length of database: 944
Effective search space: 511648
Effective search space used: 511648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_a23.g1 MSMg01no382_a23.g1 CHROMAT_FILE:
MSMg01no382_a23.g1 PHD_FILE: MSMg01no382_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:40 2005
(513 letters)
>mm_chr1_191168249_191169157
Length = 909
Score = 953 bits (493), Expect = 0.0
Identities = 506/513 (98%), Gaps = 6/513 (1%)
Strand = Plus / Minus
Query: 1 tactgaagtaatcctttagtcctataaagtaggtgtgtgtgtgtgtgtgtgcatgtgcgt 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 783 tactgaagtaatcctttagtcctataaagtag--gtgtgtgtgtgtgtgtgcatgtgcgt 726
Query: 61 gtgcatgtgtgtgtgttgggagaatctggctgtggggcccagacaggcctgcagtgaaat 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 725 gtgcatgtgtgtgtgttgggagaatctggctgttgggcccagacaggcctgcagtgaaat 666
Query: 121 gagccaatgagatgaagcaacagcatgacctatgacctagaagctctgggagggtctaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gagccaatgagatgaagcaacagcatgacctatgacctagaagctctgggagggtctaag 606
Query: 181 tctgggagtgagatcagactcatatatttttaaatgacttaagttacttttgagactagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tctgggagtgagatcagactcatatatttttaaatgacttaagttacttttgagactagg 546
Query: 241 agtcaagaaaaacgtgcttaaattggagcaagatggatgctttatttcatcagacagaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 agtcaagaaaaacgtgcttaaattggagcaagatggatgctttatttcatcagacagaac 486
Query: 301 aggtgctgggactattctagagtcagaaatagaacaacaagtacaaaaaaaaaaaaccca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 485 aggtgctgggactattctagagtcagaaatagaacaacaagtacaaaaaaaaa----cca 430
Query: 361 tcattgatgttggagagtcttgtaaacgacctaagaggttcacattacagccaaggctgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tcattgatgttggagagtcttgtaaacgacctaagaggttcacattacagccaaggctgt 370
Query: 421 gtctgtggcgtccttcagatccctgggaaaacactgactgtgtgcaaggtgctgggggca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gtctgtggcgtccttcagatccctgggaaaacactgactgtgtgcaaggtgctgggggca 310
Query: 481 gaaggtggaggtcagctgggagttcctgctggc 513
|||||||||||||||||||||||||||||||||
Sbjct: 309 gaaggtggaggtcagctgggagttcctgctggc 277
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 909
Length adjustment: 10
Effective length of query: 503
Effective length of database: 899
Effective search space: 452197
Effective search space used: 452197
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
