BAC Information

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BAC

Clone NameMSMg01-382D08
Chromosome1 (Build37)
Map Location 36,714,487 - 36,883,688
singlet/doubletdoublet
Overlap geneBC050210, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131
Upstream geneLOC100041544, LOC666283, LOC100041091, EG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, EG623414
Downstream geneEG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382D08.T7 (MSMg01no382_d08.b1)MSMg01-382D08.TJ (MSMg01no382_d08.g1)
ACCAG486167AG486168
length756753
length of high quality
(start - end)		509 (36 - 544)523 (62 - 584)
definitionCHROMAT_FILE: MSMg01no382_d08.b1 PHD_FILE: MSMg01no382_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:53 2005CHROMAT_FILE: MSMg01no382_d08.g1 PHD_FILE: MSMg01no382_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,714,487 - 36,714,992)(36,883,221 - 36,883,688)
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATGA
TGGGTGAATACTTTTTTTCTTAATGCTATTTGTTTTCCTGTATTCCCTTC
CATCTGCCATGAGGCAAAGCACAAAGCTCTCACTAGAAACTGTACAGATG
CCAGGACCATGCTTTTGGACTCCCAGAACCATAAACCAAATAGCCTCTTT
TCTTTATAAACCTCCTGGTCTTGGGTATTCTGTTACAGCAACAGAAAATA
GACTGATAGATTCTTTCACTTCCTCTTGCTGTAACAAGCCTGTACACTCC
TAGAGAGCATGAAGCATCCTTTAGCCTTCGCTGTCCTTGCTTCTGAAGGC
TGTTGAAAAAAATCTCGGGAGTCCCCATCCTCTACCTGGCCCTTCTAGGG
GCTCCCTACAGTTTCCATAGCTCATGCTCTGCTAGTTTCTCAGCACTGCA
CCATTTCTTCCAGGACGGTCCACATGATCTTTCTTTAGCATGCAGAAAAA
CACACTTCTGACTCTTCAGAAGCTCCCATGATTCAGTGGGTGTCTGTGTC
CAACCGCTTTACCACATCACCACTTTATCTATGGCCACATCCCTCCTAAC
TGTCAGGACCCCAGATTTTCTGTCCCAGACCTCCAGGAAAAGCAAGTGCT
GTGGTTACCTGCCTTTTAAAAAAAAAACCCCCTCCCCCCTCCAAGGGTCC
AAGGGGCAAGCCTTTCTCTCCCTATTGGGTTGGAAAATAGCGCAATTCCT
TTAATA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCAAAACTAAGGGTTGCTATTCTTCAGTGTCCAGTGGGAA
GTGATCTTGGAATCTACTATAGATGCCCAAATCTGTGATTATCGCAGGCC
AGGCCCTTATGGAGAATGCTGTAGTATTCGTAGGCAAACAGTGACATCCG
TGAATGTGGAATCTACAGATGGGGAAGACTGACTGCCCATACTGGTCTTG
TTCTAATTTAGAAATTAGAATAGATAGTGGTAAATGGAACACAGGTTAAT
ATATAACACAGCACTGCAGTTAAACTATTACTTTCACCTTTTGCCTTAAG
GAAAGGACTCTATAGCTTTTCTTTGGTATAGTAACTCCCTGCATTCACTG
CCCTTGCTCCTTGGGACATTTATAAAGCATGATAAGGGTTGATTGAACAC
AAGCACTGTGTTGCTACCACAGTTTCCCTTTGAGACCTACAGGATTGATG
AGTGGGTCGCATGTACAGGATTGGATTCACAGGATGAAGGACTAATTCAC
ACTGGGACAGCTCAGGCTTTGCTGACTGCTCAGAGAAGCAAACCACTGAA
AACTTAGGAGTTACTTTTGATATTTTTCACATCAGTCCCCCCCTCCCATA
TGATATATTTATGATATATTTAAGCTCCTTAATTCCCGGTACCTTCCGGG
AGCTTTTTCCACATTATTTTCTCTTGCCTTATTTTTACCTTGTTAAATAG
AAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_d08.b1 MSMg01no382_d08.b1 CHROMAT_FILE:
MSMg01no382_d08.b1 PHD_FILE: MSMg01no382_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:53 2005
         (509 letters)



>mm_chr1_36714284_36715192
          Length = 909

 Score =  955 bits (494), Expect = 0.0
 Identities = 503/506 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaatgatgggtgaatactttttttcttaatgctatttgttttcctgtattccct 63
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 204 ggaattcaatgatgggtgaatactttttttcttaatgctatttgtttttctgtattccct 263

                                                                       
Query: 64  tccatctgccatgaggcaaagcacaaagctctcactagaaactgtacagatgccaggacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tccatctgccatgaggcaaagcacaaagctctcactagaaactgtacagatgccaggacc 323

                                                                       
Query: 124 atgcttttggactcccagaaccataaaccaaatagcctcttttctttataaacctcctgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgcttttggactcccagaaccataaaccaaatagcctcttttctttataaacctcctgg 383

                                                                       
Query: 184 tcttgggtattctgttacagcaacagaaaatagactgatagattctttcacttcctcttg 243
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgttgggtattctgttacagcaacagaaaatagactgatagattctttcacttcctcttg 443

                                                                       
Query: 244 ctgtaacaagcctgtacactcctagagagcatgaagcatcctttagccttcgctgtcctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgtaacaagcctgtacactcctagagagcatgaagcatcctttagccttcgctgtcctt 503

                                                                       
Query: 304 gcttctgaaggctgttgaaaaaaatctcgggagtccccatcctctacctggcccttctag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcttctgaaggctgttgaaaaaaatctcgggagtccccatcctctacctggcccttctag 563

                                                                       
Query: 364 gggctccctacagtttccatagctcatgctctgctagtttctcagcactgcaccatttct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gggctccctacagtttccatagctcatgctctgctagtttctcagcactgcaccatttct 623

                                                                       
Query: 424 tccaggacggtccacatgatctttctttagcatgcagaaaaacacacttctgactcttca 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 624 tccaggacggtccacatgatctttctttagcatgcagaaaaacacacttctgcctcttca 683

                                     
Query: 484 gaagctcccatgattcagtgggtgtc 509
           ||||||||||||||||||||||||||
Sbjct: 684 gaagctcccatgattcagtgggtgtc 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no382_d08.g1 MSMg01no382_d08.g1 CHROMAT_FILE:
MSMg01no382_d08.g1 PHD_FILE: MSMg01no382_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:53 2005
         (523 letters)



>mm_chr1_36883221_36884143
          Length = 923

 Score =  905 bits (468), Expect = 0.0
 Identities = 468/468 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaactaagggttgctattcttcagtgtccagtgggaagtgatcttggaatctactata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 caaaactaagggttgctattcttcagtgtccagtgggaagtgatcttggaatctactata 409

                                                                       
Query: 61  gatgcccaaatctgtgattatcgcaggccaggcccttatggagaatgctgtagtattcgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gatgcccaaatctgtgattatcgcaggccaggcccttatggagaatgctgtagtattcgt 349

                                                                       
Query: 121 aggcaaacagtgacatccgtgaatgtggaatctacagatggggaagactgactgcccata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aggcaaacagtgacatccgtgaatgtggaatctacagatggggaagactgactgcccata 289

                                                                       
Query: 181 ctggtcttgttctaatttagaaattagaatagatagtggtaaatggaacacaggttaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ctggtcttgttctaatttagaaattagaatagatagtggtaaatggaacacaggttaata 229

                                                                       
Query: 241 tataacacagcactgcagttaaactattactttcaccttttgccttaaggaaaggactct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tataacacagcactgcagttaaactattactttcaccttttgccttaaggaaaggactct 169

                                                                       
Query: 301 atagcttttctttggtatagtaactccctgcattcactgcccttgctccttgggacattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 atagcttttctttggtatagtaactccctgcattcactgcccttgctccttgggacattt 109

                                                                       
Query: 361 ataaagcatgataagggttgattgaacacaagcactgtgttgctaccacagtttcccttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 ataaagcatgataagggttgattgaacacaagcactgtgttgctaccacagtttcccttt 49

                                                           
Query: 421 gagacctacaggattgatgagtgggtcgcatgtacaggattggattca 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  gagacctacaggattgatgagtgggtcgcatgtacaggattggattca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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